PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn225571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24913.6 Da PI: 8.6129 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Achn225571 57 TYRGVRIRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAQAIKG 106 69****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 57 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 57 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 57 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 57 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.10E-29 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 4.4E-10 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKMQQSKFDC VNSLSQSTRS TPKEGKAIKG QRRVEETKNG NEHRKRHKSG GDEKHPTYRG 60 VRIRNWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AQAIKGKSAY LNFPELAHEL 120 PRPATTSPKD IQAAAAMAAA SLFSGEATRA EPSRAGLPCS HSSTTLSSSE NTTQESVNSP 180 SNHDDDTFFD LPDLSDGCCY YASSWQLAAS ELSFRLDDPF SWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-17 | 54 | 114 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ869853 | 0.0 | GQ869853.1 Actinidia deliciosa ethylene response factor 2 (ERF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051115.1 | 8e-98 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 1e-64 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2R6R989 | 1e-163 | A0A2R6R989_ACTCH; Ethylene-responsive transcription factor | ||||
TrEMBL | D8VD29 | 1e-163 | D8VD29_ACTDE; Ethylene response factor 2 | ||||
STRING | XP_009613551.1 | 2e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-60 | ERF family protein |
Publications ? help Back to Top | |||
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