PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn225011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YC | ||||||||
Protein Properties | Length: 462aa MW: 51684 Da PI: 6.9689 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.7 | 2.2e-55 | 280 | 383 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv Achn225011 280 QLQSFWTNQhqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 378 89*****999999************************************************************************************** PP NF-YC 97 prdel 101 pr+el Achn225011 379 PREEL 383 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04573 | 4.8E-14 | 82 | 130 | IPR007653 | Signal peptidase 22kDa subunit |
SuperFamily | SSF47113 | 5.03E-32 | 279 | 374 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.2E-21 | 302 | 365 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.7E-37 | 303 | 380 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006465 | Biological Process | signal peptide processing | ||||
GO:0005787 | Cellular Component | signal peptidase complex | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0008233 | Molecular Function | peptidase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MIPNKVEHIH NSQSLMIRET QALTQSSNNI STDTYSDSQL RDKTNFYSVY ACTTQQCIRA 60 RGSISSSIPL RRLTTSHPPL SKVFAFLAAE YETPKNSLNQ VSLWDGIIPS KEHAKFSIHT 120 TNKYRFTDQG ILSNSKTRPD GITWTYGSNN SGNTSRLSHF SRSLVHHIGL FVGKELEDGE 180 GVVRSEVVHV LPFEPPQDRM DQQGHGHPQG AGVVGSAAQL HYGTREYEPN QGNGTPNQGP 240 VVTSVGASLS PSQPAGVQLA QHQLAYQHIH QQQLQQLQQQ LQSFWTNQHQ EIEKVTDFKN 300 HSLPLARIKK IMKADEDVRM ISAEAPIVFA RACEMFILEL TLRSWNHTEE NKRRTLQKND 360 IAAAITRTDI FDFLVDIVPR EELKDEELAS IPRGTIPVGV PTDAYPYYYM PTQHSPQAGT 420 PGMMMGKPVM DPVLYAQQPH PYMAPQMWPQ APQEPQSPSD S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-58 | 288 | 380 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 358 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028098953.1 | 1e-147 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_028098954.1 | 1e-147 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 5e-82 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2R6RDA0 | 0.0 | A0A2R6RDA0_ACTCH; Nuclear transcription factor Y subunit C-9 like | ||||
STRING | VIT_14s0128g00250.t01 | 1e-138 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 1e-81 | nuclear factor Y, subunit C9 |