PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn224551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 117aa MW: 13875.9 Da PI: 11.3795

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn224551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.2	1.1e-09	35	83	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 y Vr ++++ +++AeIrd + + +r++l +f ta+ A a+++a+ ++ Achn224551 35 YIRVR-NRTWEKYAAEIRDTTR---HgARVWLRTFTTAKAADLACDQAAFVMR 83 56687.888********432...25********8888888899887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-16	34	93	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-8	34	98	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.722	34	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-13	35	93	IPR016177	DNA-binding domain
Pfam	PF00847	6.3E-5	39	83	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSLFYPYSCR ESEGKISGSR FFEGKKDPKK SEKRYIRVRN RTWEKYAAEI RDTTRHGARV 60 WLRTFTTAKA ADLACDQAAF VMRRWLAWRN FPTDKSVNRF VISNVGDRRG LKYRRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-15	23	101	3	81	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028104781.1	2e-22	ethylene-responsive transcription factor ERF098-like
Swissprot	A0A3Q7I5Y9	2e-17	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A2R6RJ76	6e-27	A0A2R6RJ76_ACTCH; Ethylene-responsive transcription factor 1B like
STRING	XP_009796372.1	1e-20	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	6e-14	ERF family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]