PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn223911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 563aa    MW: 61097.7 Da    PI: 5.0723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn223911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
       Achn223911 40 KGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                     79******************************************9986 PP

2Myb_DNA-binding48.61.9e-1593136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
       Achn223911  93 KGAITPEEERLIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136
                      6888******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.853587IPR017930Myb domain
SuperFamilySSF466891.95E-2939134IPR009057Homeodomain-like
SMARTSM007176.7E-153989IPR001005SANT/Myb domain
PfamPF002493.7E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-234194IPR009057Homeodomain-like
CDDcd001671.72E-114287No hitNo description
PROSITE profilePS5129423.10188142IPR017930Myb domain
SMARTSM007178.4E-1692140IPR001005SANT/Myb domain
PfamPF002491.7E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2495140IPR009057Homeodomain-like
CDDcd001671.84E-1197136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSQMTNESDD EMISKDCTDS PSMDESNCGG SASGGVVLKK GPWTSAEDAI LVDYVRKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPH LKKGAITPEE ERLIAELHAK MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR CQRGGLPLYP PEVCLQALQE NEQNRNSSGD RGQHDLLQAN  180
SYEIPDVIFD SLKTNQGVLP YVPELPDIST SSILMKGLGS SQYYGFVPSV VHRQKRLRES  240
ATSYYDGSAR NEPPPFDQIP DDSYDNITSQ SFGLSFRCDP DPITKNLLPF GGNQGSHSLL  300
NGNFSASKPA TTVGVKLELP SLQYPETDFS SWGSSSPPAL LESVDAFIQS PPLSGTDCLS  360
PRNSGLLDAL LHEAKALSAK NHVSDKTSNS STTPPTPGDV THGYTLDTSK TKWKEYGEST  420
SPLGNSAASI FSERTPVSVS ENSLDENPPA ETFPGSIMMS EAVEQKTWAL DGEKKETAAQ  480
LDFSRPDALL GSCWLGQSVT YAKDRGGVTT DADAAAALGD DDSHNNDYKP HMGAGTVLNQ  540
GWGFGSCAWN NMPPVCQMSE LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30381405106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099441.10.0transcription factor GAMYB-like
TrEMBLA0A2R6RDV20.0A0A2R6RDV2_ACTCH; Transcription factor GAMYB like
STRINGVIT_13s0067g01630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-114myb domain protein 33