PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn223911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 563aa MW: 61097.7 Da PI: 5.0723 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l Achn223911 40 KGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Achn223911 93 KGAITPEEERLIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 6888******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.85 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-29 | 39 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 23.101 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 95 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-11 | 97 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MSQMTNESDD EMISKDCTDS PSMDESNCGG SASGGVVLKK GPWTSAEDAI LVDYVRKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPH LKKGAITPEE ERLIAELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR CQRGGLPLYP PEVCLQALQE NEQNRNSSGD RGQHDLLQAN 180 SYEIPDVIFD SLKTNQGVLP YVPELPDIST SSILMKGLGS SQYYGFVPSV VHRQKRLRES 240 ATSYYDGSAR NEPPPFDQIP DDSYDNITSQ SFGLSFRCDP DPITKNLLPF GGNQGSHSLL 300 NGNFSASKPA TTVGVKLELP SLQYPETDFS SWGSSSPPAL LESVDAFIQS PPLSGTDCLS 360 PRNSGLLDAL LHEAKALSAK NHVSDKTSNS STTPPTPGDV THGYTLDTSK TKWKEYGEST 420 SPLGNSAASI FSERTPVSVS ENSLDENPPA ETFPGSIMMS EAVEQKTWAL DGEKKETAAQ 480 LDFSRPDALL GSCWLGQSVT YAKDRGGVTT DADAAAALGD DDSHNNDYKP HMGAGTVLNQ 540 GWGFGSCAWN NMPPVCQMSE LP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 38 | 140 | 5 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028099441.1 | 0.0 | transcription factor GAMYB-like | ||||
TrEMBL | A0A2R6RDV2 | 0.0 | A0A2R6RDV2_ACTCH; Transcription factor GAMYB like | ||||
STRING | VIT_13s0067g01630.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14059 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-114 | myb domain protein 33 |