PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222811
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 331aa    MW: 37307.2 Da    PI: 6.5012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161363148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     rg W++eEd++l++ ++ +G g+W+++++      + R++k+c++rw +yl
       Achn222811 13 RGLWSPEEDDKLIKHITTHGHGCWSSVPKLADvvgLQRCGKSCRLRWINYL 63
                     788**********************************************97 PP

2Myb_DNA-binding53.55.6e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
       Achn222811  69 RGSFTEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 112
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25466IPR009057Homeodomain-like
PROSITE profilePS5129415.731863IPR017930Myb domain
SuperFamilySSF466892.21E-2910110IPR009057Homeodomain-like
SMARTSM007171.6E-111265IPR001005SANT/Myb domain
PfamPF002497.1E-141363IPR001005SANT/Myb domain
CDDcd001671.96E-101663No hitNo description
PROSITE profilePS5129426.7164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2567119IPR009057Homeodomain-like
SMARTSM007172.1E-1668116IPR001005SANT/Myb domain
PfamPF002491.9E-1569112IPR001005SANT/Myb domain
CDDcd001675.60E-1271111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DDKLIKHITT HGHGCWSSVP KLADVVGLQR CGKSCRLRWI  60
NYLRPDLKRG SFTEQEERII IDVHRILGNR WAQIAKHLPG RTDNEVKNFW NSCIKKKLIA  120
QGLDPNTHNL LSSHKTKLIH SHGHLHQTTS VFSISISHAN DANNFVDMKT PFVTLPPRIN  180
TINNIPTSLY ENSSTITTTT ASTLLEYQNP NSLMEFASQS SMEMETLPSS SLNIPSGFGI  240
LDENCLWNTG LEPFEIEPTR REMLQQQQPE QEKVCEGEIG NKVNESNGAQ NMETSMMDSS  300
NFDFDFVESA LMPCGMYCSV SPMDQLAWDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091174.11e-146myb-related protein 330-like
TrEMBLA0A2R6QMA10.0A0A2R6QMA1_ACTCH; Transcription factor like
STRINGXP_009783085.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-84myb domain protein 67