PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn222811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37307.2 Da PI: 6.5012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 13 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G g+W+++++ + R++k+c++rw +yl Achn222811 13 RGLWSPEEDDKLIKHITTHGHGCWSSVPKLADvvgLQRCGKSCRLRWINYL 63 788**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.6e-17 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ Achn222811 69 RGSFTEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 112 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 4 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.731 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-29 | 10 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 12 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-10 | 16 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.71 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 67 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.60E-12 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DDKLIKHITT HGHGCWSSVP KLADVVGLQR CGKSCRLRWI 60 NYLRPDLKRG SFTEQEERII IDVHRILGNR WAQIAKHLPG RTDNEVKNFW NSCIKKKLIA 120 QGLDPNTHNL LSSHKTKLIH SHGHLHQTTS VFSISISHAN DANNFVDMKT PFVTLPPRIN 180 TINNIPTSLY ENSSTITTTT ASTLLEYQNP NSLMEFASQS SMEMETLPSS SLNIPSGFGI 240 LDENCLWNTG LEPFEIEPTR REMLQQQQPE QEKVCEGEIG NKVNESNGAQ NMETSMMDSS 300 NFDFDFVESA LMPCGMYCSV SPMDQLAWDC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 13 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028091174.1 | 1e-146 | myb-related protein 330-like | ||||
TrEMBL | A0A2R6QMA1 | 0.0 | A0A2R6QMA1_ACTCH; Transcription factor like | ||||
STRING | XP_009783085.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 3e-84 | myb domain protein 67 |