PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 340aa    MW: 40224.1 Da    PI: 7.179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-10871581583
                 -EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3  15 rlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 +l +p k a+++     + + ++++ + d+ ++ We+++ ++    ++v+t+GW++F++ ++Lk  D++ F+
  Achn222431  87 MLAFPYKKASAYfppVPNRPLEIKIEVSDPLNKNWEMTVEFSTVFYAFVITNGWEDFCRWHNLKPYDVIYFY 158
                 4679999999999884445588999999***********88888888************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1267163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-1371160IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-1074158No hitNo description
SMARTSM010190.008376189IPR003340B3 DNA binding domain
PfamPF023621.8E-787158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-9207302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-7209300IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCHDRAVVTV EVVAIVDNEK RRRLAKLLTV IKKSIKKDVS SQQRWYKPCR DLSMMENIFT  60
SSSTTVHEFK RENFLFDVEL NPPDVKMLAF PYKKASAYFP PVPNRPLEIK IEVSDPLNKN  120
WEMTVEFSTV FYAFVITNGW EDFCRWHNLK PYDVIYFYKP NPRLHDRHYL MDYVKKEETN  180
PNRKISEAEP HENNSKAESM ELTQGAENVL LFEMQLRHND LIDETLMLPY EAEYHFTEVK  240
IPPRTHEMGR MCFTDARNKN WIMDVTFRNM IDSYTVQEVW TEFVNEHGLK AMDVIKVYKT  300
DKPLDARRHF LIECVKTSLP EQSSHDHESS SSRIIKKKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-06related to ABI3/VP1 2