PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 345aa    MW: 39882.6 Da    PI: 4.5059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-1094179183
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+k+lt +dv  +g++++p + ++++     g++  ++ ++ + d +   +W+++++y+  ++++++t+GW++F +a++     ++ F+
  Achn222421  94 FEKELTANDVE-HGIISFPYSTISDYfppvaGKP--SELQIEVSDpPLDTEWQMTVKYDAAQRKFLITSGWEDFWNAHDFLGSAMIYFY 179
                 78888666665.677************9985444..4457888887888******************************9988888887 PP
2B334.53.5e-11232314783
                 .-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   7 psdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 +   +k grlvlp + a+e+        +  ++e   + ++d + r W++++ +++  ++y+ ++G keFv+  +Lk+ D++ F+
  Achn222421 232 NRIDFKDGRLVLPYEEARENfqeieippE--THEMERICFTDAWVRNWSMEVMFKNELDAYLVQDGGKEFVDYLNLKAADVIKFY 314
                 5567899**************99977432..335568***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1386170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-1288179IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-892169No hitNo description
PfamPF023621.2E-794179IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-9225330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-10225316IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-8232314IPR003340B3 DNA binding domain
CDDcd100173.34E-6237314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSESRDIDTG QEDKKGKRKF SDLQQQQETE TGTGKQGHTK TNPPISDNEK NKEKALHIFL  60
GITYFKGELL ISDDTMVTSS STKLIEFKPE NFRFEKELTA NDVEHGIISF PYSTISDYFP  120
PVAGKPSELQ IEVSDPPLDT EWQMTVKYDA AQRKFLITSG WEDFWNAHDF LGSAMIYFYI  180
PLPRLHARHY LIEYVRLQDR DIENTTESDS DDYAYANNDI LGRVMVFELK VNRIDFKDGR  240
LVLPYEEARE NFQEIEIPPE THEMERICFT DAWVRNWSME VMFKNELDAY LVQDGGKEFV  300
DYLNLKAADV IKFYEPDNAW DPMRHFLVDC VKSNSHIPGS SSGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6R3990.0A0A2R6R399_ACTCH; AP2/ERF and B3 domain-containing protein