PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn222231

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRF

Protein Properties

Length: 538aa MW: 57802.4 Da PI: 9.3516

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn222231	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.4e-24	186	230	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d++pgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Achn222231 186 DPQPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 230 799***************************************985 PP
2	QLQ	62.9	8.7e-22	116	152	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Achn222231 116 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 152 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-12	116	152	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.066	117	152	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.4E-16	117	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.072	186	230	IPR014977	WRC domain
Pfam	PF08879	2.9E-20	187	229	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MLKWSPESGS CLDPEAKQNW YGSGFLKQER PKEEVSEDDL RASKVSKTFD FSANYKAMPL 60 LRSSGSLFSE DQQMLSFSSP SSSQVMTLPL YQHPSSAYGK NTASGGYGYG GGGVKGPFTP 120 SQWMELEHQA LIYKYITANV PIPSNLLIPI RKALDSAGLY GFSGGPLGPT SLGWGAFRVG 180 FSNSTDPQPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG QTGHSVSGPN 240 TAAATTTSKL MPMASAASAS VVPSGNASNG LGLAHHSQFK NLQPSGTNPT PNRVFLNKEN 300 VGEGIQESQF SIPKHHNPYG LDSSRAEFGL VCSDSLLNPL RKASSLIACK NYGSYHAPNT 360 TETESNRSLR QFMDDWPNTN QADRAHLSIS IPVAPTSSTS SPALSPLRLS RELESTQMGL 420 GVGSVVNEPN QKEANWIPIS WENSMGGPLG EVLHRTNSGC GDYKNSSALN LMTKGWDVSP 480 RLASSPTGVL QKMTFGSLSN SSAGSSPRTE SHRIHEGASF FNDLLGSTLA KSSSLPA*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MLKWSPESGS CLDPEAKQNW YGSGFLKQER PKEEVSEDDL RASKVSKTFD FSANYKAMPL  60
LRSSGSLFSE DQQMLSFSSP SSSQVMTLPL YQHPSSAYGK NTASGGYGYG GGGVKGPFTP  120
SQWMELEHQA LIYKYITANV PIPSNLLIPI RKALDSAGLY GFSGGPLGPT SLGWGAFRVG  180
FSNSTDPQPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG QTGHSVSGPN  240
TAAATTTSKL MPMASAASAS VVPSGNASNG LGLAHHSQFK NLQPSGTNPT PNRVFLNKEN  300
VGEGIQESQF SIPKHHNPYG LDSSRAEFGL VCSDSLLNPL RKASSLIACK NYGSYHAPNT  360
TETESNRSLR QFMDDWPNTN QADRAHLSIS IPVAPTSSTS SPALSPLRLS RELESTQMGL  420
GVGSVVNEPN QKEANWIPIS WENSMGGPLG EVLHRTNSGC GDYKNSSALN LMTKGWDVSP  480
RLASSPTGVL QKMTFGSLSN SSAGSSPRTE SHRIHEGASF FNDLLGSTLA KSSSLPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283504.2	0.0	PREDICTED: growth-regulating factor 1
Swissprot	Q6AWY3	1e-105	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2R6R3B5	0.0	A0A2R6R3B5_ACTCH; Growth-regulating factor like
STRING	VIT_18s0001g08650.t01	0.0	(Vitis vinifera)
STRING	EOY15657	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	5e-73	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]