PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn221931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 448aa    MW: 50430.9 Da    PI: 7.7071
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn221931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.24.6e-101560241
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                ++r C+ + +k++++fC  ++ +lC++C +++H+       H++v 
  Achn221931 15 NARACDGCIKKRARWFCAADDAFLCHSCDVSIHSAnplarrHERVL 60
                6789*****************************6688888898875 PP
2CCT67.92.6e-23391434144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Achn221931 391 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 434
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3951461IPR000315B-box-type zinc finger
PfamPF006433.4E-71560IPR000315B-box-type zinc finger
CDDcd000219.18E-101761No hitNo description
PfamPF062037.6E-18391433IPR010402CCT domain
PROSITE profilePS5101716.083391433IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSNKKLANA IGSKNARACD GCIKKRARWF CAADDAFLCH SCDVSIHSAN PLARRHERVL  60
LKTETSQDWH REESPMVNLV PSWDRGFTRR ARTPRLGKKS IHRTGDGTRL NSHSHVPELG  120
SGDTSNEDNE EQEQLVYRVP KFDQFVTGGG ESKVLGLNRF FPSEMDIAEF DVESLLGKGV  180
DGEESFGMES LGLLDWREKD STSMEGFLGG GRIKVEDEEE MNSIINNHFD VTKELPFELD  240
FDYEEEENCK VGGGGIIMEE SGEGKKSGEV KMMKKRNILL RLDYEGVIMA WANQRSPWTS  300
GGRPVLDNCE CWPDCMNFHK HDVEFCKIFI SNQSYNFENA RLTSITASVD IHKDILTLKL  360
GIFQGSCGRV HHQYGEAGLM GGHSAIGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA  420
EKRPRMKGRF VKRASFAAAP ANCLSFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401417RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088323.11e-143zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2R6P4B30.0A0A2R6P4B3_ACTCH; Zinc finger protein like
STRINGVIT_01s0011g03520.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-86B-box type zinc finger protein with CCT domain