PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn221631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 357aa MW: 39220.1 Da PI: 6.8017 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.2e-36 | 42 | 168 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec...eaesssssasnsssg... 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+ +ak+ai+el+++ s s+ e+ e +n++++ Achn221631 42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLISKAKAAIDELAELppwkptS-RSNAEVtisE--------QNQEEDeta 131 79**************************************************************7766431.2221222221........222222111 PP TCP 89 ....................................k 89 + Achn221631 132 qfdanalmgenssnflppsmdsdaiadtiksffpigA 168 2223335554444444444444444444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-33 | 42 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.264 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MEETHRRRHL HSRRQPPLSR LGLRHAGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LISKAKAAID ELAELPPWKP TSRSNAEVTI 120 SEQNQEEDET AQFDANALMG ENSSNFLPPS MDSDAIADTI KSFFPIGAAA ADSSAVQFQS 180 QDLRLSLQSF QDQTLLHQQQ SQHHGSNDHN EQVIFSGTTG VGYDAPSAAE TSRFQRMITW 240 SDGGYASSCG GGGFVFNSPP LPAPPLFGQN NQFVSQRGPL QSSNTQSIRA WIDQYSIPAA 300 ADHHHHHHLQ NLPMYQSSLS GIGLSGFRIP ARIQGEEEEH DGVSDKPSSA SSDSRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077281.1 | 1e-141 | transcription factor TCP4-like | ||||
Swissprot | Q9MAH8 | 5e-95 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A2R6QCJ7 | 0.0 | A0A2R6QCJ7_ACTCH; Transcription factor like | ||||
STRING | PGSC0003DMT400032269 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-82 | TCP family protein |
Publications ? help Back to Top | |||
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