PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn220531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YA | ||||||||
Protein Properties | Length: 231aa MW: 25399.3 Da PI: 9.4558 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.5 | 6.9e-31 | 10 | 66 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR +Rak+e+ +k+ k+rkpylh SRh hA+rRpRg+gGrF Achn220531 10 DGPIYVNAKQYHGIIRRRLSRAKAESVNKV-LKARKPYLHLSRHLHAMRRPRGCGGRF 66 57****************************.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.4E-34 | 8 | 69 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.419 | 9 | 69 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-27 | 12 | 66 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-22 | 12 | 34 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 14 | 34 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-22 | 43 | 66 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLPLNLTTDD GPIYVNAKQY HGIIRRRLSR AKAESVNKVL KARKPYLHLS RHLHAMRRPR 60 GCGGRFLNSK TSKGAKCRNE PEKTGNGHHF QPAESQISEV LQSDSGNLSS PKEASGSRTN 120 LLGSEVTSLF YRGDVDHFAF NHIRPSVLSL TDMMNTGPGR AMPNLEVVEV DVIEVSISSL 180 DIVLASGVMY CKIVDLVCCP AMTYKCGVHV RDLEVVEVSI LSPNFKLLVK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 4e-18 | 10 | 69 | 2 | 62 | HAPB protein |
4g92_A | 4e-18 | 10 | 69 | 2 | 62 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119449.1 | 1e-81 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_028119450.1 | 1e-81 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_028119451.1 | 1e-81 | nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Swissprot | Q8LFU0 | 2e-34 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A2R6Q437 | 1e-115 | A0A2R6Q437_ACTCH; Nuclear transcription factor Y subunit A-10 like | ||||
STRING | XP_006430046.1 | 3e-67 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 1e-36 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
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