PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn219131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SBP | ||||||||
Protein Properties | Length: 211aa MW: 23484.3 Da PI: 8.751 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.3e-41 | 130 | 205 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C++d++ ak yhrrhkvCe+h+k pvv+v+g++qrfCqqCsrfhels+fDe+krsCrrrLa+hnerrrk++ Achn219131 130 CQVENCATDMTYAKPYHRRHKVCEFHAKVPVVAVAGIHQRFCQQCSRFHELSKFDESKRSCRRRLAGHNERRRKSS 205 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-33 | 122 | 191 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.923 | 127 | 204 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 128 | 208 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-31 | 130 | 203 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRNHAEIVNG CTKRSSQEDS MNIINLAKTD KEIIDRDHTK SLKISLSSST SSSLLSSSST 60 TTVLYPLSLC PSTMETSKAG GKRRMKEAME EEEEEEEEDF AGLGSAEEDK KKKVSGRRGS 120 SGGGSTQPSC QVENCATDMT YAKPYHRRHK VCEFHAKVPV VAVAGIHQRF CQQCSRFHEL 180 SKFDESKRSC RRRLAGHNER RRKSSYDITG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-35 | 121 | 203 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00290 | DAP | Transfer from AT2G33810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022721038.1 | 2e-58 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | Q38741 | 7e-55 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A2R6QLD9 | 3e-96 | A0A2R6QLD9_ACTCH; Squamosa promoter-binding-like protein | ||||
STRING | EOY28200 | 2e-51 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 9e-42 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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