PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn218481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32870.6 Da PI: 9.6316 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.9e-09 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rWTt E +++ +a +++ + +W ++a+t++ ++t +++ r+ Achn218481 24 RWTTAENKRFENALAEYDEDtpdRWQKVAATIP-RKTVEDVLRRYKE 69 9********************************.*******999975 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Achn218481 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 176 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-4 | 20 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.681 | 20 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.45E-6 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 2.2E-6 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-13 | 123 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.728 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.28E-17 | 126 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 128 | 180 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-13 | 129 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.67E-11 | 132 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MRWEMEILAP AYSDRGIEES RSTRWTTAEN KRFENALAEY DEDTPDRWQK VAATIPRKTV 60 EDVLRRYKEL EDDVSSIEAG LIPIPVYNSN SPFTLEWGNG HGFDRFKPSY GPGGKRSLSG 120 RASEQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ 180 LSGGKDKRRA SIHDITTVNL NDNHQTPSPD YKRPPSPDHS SAIPHQRNPV SNPRTQFQWN 240 PRSGGVEMAL YHQTHGNTFM SPYEIHSYGS PNMGFQMQAI NHYPHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-13 | 25 | 89 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028127257.1 | 1e-137 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-130 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2R6QSX6 | 0.0 | A0A2R6QSX6_ACTCH; Transcription factor DIVARICATA like | ||||
STRING | Gorai.009G093700.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 8e-99 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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