PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn218481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 287aa    MW: 32870.6 Da    PI: 9.6316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn218481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWTt E +++ +a +++  +   +W ++a+t++ ++t +++  r+  
       Achn218481 24 RWTTAENKRFENALAEYDEDtpdRWQKVAATIP-RKTVEDVLRRYKE 69
                     9********************************.*******999975 PP

2Myb_DNA-binding45.91.3e-14132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       Achn218481 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 176
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-42070IPR009057Homeodomain-like
PROSITE profilePS512938.6812073IPR017884SANT domain
SMARTSM007171.3E-72173IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-112378IPR009057Homeodomain-like
CDDcd001678.45E-62470No hitNo description
PfamPF002492.2E-62469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-13123181IPR009057Homeodomain-like
PROSITE profilePS5129420.728125181IPR017930Myb domain
SuperFamilySSF466896.28E-17126180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17128180IPR006447Myb domain, plants
SMARTSM007173.2E-13129179IPR001005SANT/Myb domain
PfamPF002494.9E-13132176IPR001005SANT/Myb domain
CDDcd001675.67E-11132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRWEMEILAP AYSDRGIEES RSTRWTTAEN KRFENALAEY DEDTPDRWQK VAATIPRKTV  60
EDVLRRYKEL EDDVSSIEAG LIPIPVYNSN SPFTLEWGNG HGFDRFKPSY GPGGKRSLSG  120
RASEQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ  180
LSGGKDKRRA SIHDITTVNL NDNHQTPSPD YKRPPSPDHS SAIPHQRNPV SNPRTQFQWN  240
PRSGGVEMAL YHQTHGNTFM SPYEIHSYGS PNMGFQMQAI NHYPHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1325891175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127257.11e-137transcription factor DIVARICATA-like
SwissprotQ8S9H71e-130DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2R6QSX60.0A0A2R6QSX6_ACTCH; Transcription factor DIVARICATA like
STRINGGorai.009G093700.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-99Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]