PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn218351

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 232aa MW: 25768.9 Da PI: 5.3408

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn218351	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.4	8.6e-30	110	163	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFve+v++L G +A+Pkti++lm+v+gLt+e+v+SHLQkYRl Achn218351 110 RPRLVWTPQLHKRFVEVVKHL-GVGNAVPKTIMQLMNVEGLTRENVASHLQKYRL 163 59*****************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.797	107	166	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-30	108	168	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-20	109	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	111	163	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-9	113	162	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGEEVRMSDY DGDDRVYEWE VGLPSADDLT PLSQPLISPE MASAFSISPE PRRSATDVNR 60 ASQNTLSAIS SSNNFNFKSL NDERSQEEFV EEGDEADLAR EGSDPRKAKR PRLVWTPQLH 120 KRFVEVVKHL GVGNAVPKTI MQLMNVEGLT RENVASHLQK YRLYLKRMQG LSDDGPSSDK 180 LFTSAPPPQM MHMPVIGMAH GNGHMGPYHG FESHRIVVGL ECSGTDLWIT T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-33	110	166	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028121610.1	4e-98	transcription factor PCL1
Refseq	XP_028121611.1	4e-98	transcription factor PCL1
Swissprot	Q9SNB4	2e-70	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A2R6QSX7	1e-158	A0A2R6QSX7_ACTCH; Transcription factor LUX like
STRING	VIT_06s0004g05120.t01	2e-86	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3580	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.3	7e-72	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]