PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn216821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 489aa MW: 53201.9 Da PI: 5.8944

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn216821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLH++Fveav++L G+e+AtPk +l++m+vkgLt++hvkSHLQkYRl Achn216821 263 KPRMRWTPELHDCFVEAVNKLDGAENATPKGVLKIMNVKGLTIYHVKSHLQKYRL 317 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.801	260	320	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-31	261	318	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-18	262	317	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-25	263	318	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	265	316	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-22	354	400	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MNHHSFMNEP ANEVERSHCT PSSPVHNMLS VESEGQSFSA GECSSSYQSP NVHRDLHSFL 60 GFNCSSTLQP EKFSVKSGLV SAVPYGSHIQ YSKSILSCSS MFCTSLYLSS SSSSETQRQL 120 GNLPFLPHPP SYNQPCSSVQ STTPGLFDGN PSNPHDAGNP EELAEDFLYF PGNTSDSSAH 180 GVNGSNDSIA FTEQLELQFF SDELDMAIGS GGGNPRIDEI YEAPQASSKP AIGLASSQNN 240 HSIGTPLDDL SSQPSPLLPA AHKPRMRWTP ELHDCFVEAV NKLDGAENAT PKGVLKIMNV 300 KGLTIYHVKS HLQKYRLAKY LPERKEDKKA SSSEEKKAAS SCNESDGRIK GSIPFTEALY 360 MQMEVQKQLH EQLEVQRALQ LRIEEHARYL QKILEEQQKA GNSSFFPQGM SQCANRQSGS 420 ELQPSSPPAG ASPYQVADLK TDSSVPLLSK HNTAESSGSR GQALEKKHRL EAKLESASNE 480 DPVPENSV*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MNHHSFMNEP ANEVERSHCT PSSPVHNMLS VESEGQSFSA GECSSSYQSP NVHRDLHSFL  60
GFNCSSTLQP EKFSVKSGLV SAVPYGSHIQ YSKSILSCSS MFCTSLYLSS SSSSETQRQL  120
GNLPFLPHPP SYNQPCSSVQ STTPGLFDGN PSNPHDAGNP EELAEDFLYF PGNTSDSSAH  180
GVNGSNDSIA FTEQLELQFF SDELDMAIGS GGGNPRIDEI YEAPQASSKP AIGLASSQNN  240
HSIGTPLDDL SSQPSPLLPA AHKPRMRWTP ELHDCFVEAV NKLDGAENAT PKGVLKIMNV  300
KGLTIYHVKS HLQKYRLAKY LPERKEDKKA SSSEEKKAAS SCNESDGRIK GSIPFTEALY  360
MQMEVQKQLH EQLEVQRALQ LRIEEHARYL QKILEEQQKA GNSSFFPQGM SQCANRQSGS  420
ELQPSSPPAG ASPYQVADLK TDSSVPLLSK HNTAESSGSR GQALEKKHRL EAKLESASNE  480
DPVPENSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021819954.1	1e-168	myb family transcription factor PHL6
Refseq	XP_021819955.1	1e-168	myb family transcription factor PHL6
Refseq	XP_021819956.1	1e-168	myb family transcription factor PHL6
Swissprot	Q949U2	1e-112	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A2R6R0N9	0.0	A0A2R6R0N9_ACTCH; Myb family transcription factor
STRING	VIT_09s0054g01620.t01	1e-167	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21520	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-92	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]