PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn215991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 419aa    MW: 46631.6 Da    PI: 7.9192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn215991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G g+W+++++  g+ R++k+c++rw +yl
       Achn215991 14 KGLWSPEEDEKLITHINKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding41.53.1e-1367109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+
       Achn215991  67 RGTFSQQEEGLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.702965IPR017930Myb domain
SuperFamilySSF466898.24E-2912108IPR009057Homeodomain-like
SMARTSM007178.8E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001674.20E-121761No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2465117IPR009057Homeodomain-like
SMARTSM007171.4E-1066114IPR001005SANT/Myb domain
PROSITE profilePS5129418.01266116IPR017930Myb domain
PfamPF002491.1E-1167109IPR001005SANT/Myb domain
CDDcd001672.99E-769109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLITHIN KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEGLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLKQRG  120
IDPNTHKPLS EVENENKVLE TSRSNEKSRG GSEEGKITEG GDSEKGIAIP PPPAHGFFLD  180
RYVSTHETST TTAAATKPSD IPGYFTFRQL NYRPDIGFSG NGNTNFHNPN TTSSDMISEF  240
NSSLPAVFPS MSRPILTASS TRIKPSISLP SVGSFDVNGA VHNWNSTGTF SNNGSTSNGS  300
SNSIELQSNG SFFENQIFSW GPESCIKSEK EAEIHRLEGE PEDIKWSEYL QTPFLLSTAL  360
QNQTAQDIYN GTKPETQFVT DGSSTNWHQN QHQQQPSQAA DLYNKHFQRL SATFGHYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108727.10.0transcription factor MYB61-like
TrEMBLA0A2R6R6L50.0A0A2R6R6L5_ACTCH; Transcription factor like
STRINGVIT_14s0060g00240.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-107myb domain protein 61