PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn215801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 1368aa MW: 152090 Da PI: 8.5158

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn215801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.7e-11	49	86	20	57
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k++yps+e++ + A+++gLte+qV+ WF+ rR k+k+ Achn215801 49 QKHKYPSEEMKSQFAESVGLTEKQVSGWFCHRRLKDKR 86 579*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.4E-4	39	91	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.568	48	87	IPR001356	Homeobox domain
CDD	cd00086	6.05E-9	49	87	No hit	No description
SuperFamily	SSF46689	8.98E-10	49	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-11	49	86	IPR009057	Homeodomain-like
Pfam	PF00046	5.2E-9	49	86	IPR001356	Homeobox domain
Gene3D	G3DSA:2.30.29.30	7.9E-34	538	657	IPR011993	PH domain-like
CDD	cd13365	7.80E-43	540	653	No hit	No description
SuperFamily	SSF50729	6.02E-21	541	652	IPR011993	PH domain-like
Gene3D	G3DSA:2.130.10.30	3.4E-82	761	1083	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SuperFamily	SSF50985	1.11E-79	772	1084	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
PROSITE pattern	PS00626	0	776	786	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE profile	PS50012	11.429	790	862	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF00415	1.0E-5	791	833	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE pattern	PS00626	0	849	859	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF00415	7.7E-12	862	911	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE profile	PS50012	12.594	863	914	IPR000408	Regulator of chromosome condensation, RCC1
PRINTS	PR00633	2.2E-8	864	880	IPR000408	Regulator of chromosome condensation, RCC1
PRINTS	PR00633	2.2E-8	898	911	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE pattern	PS00626	0	901	911	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF00415	3.8E-13	927	975	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE profile	PS50012	15.107	927	978	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF00415	5.0E-7	978	1027	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE profile	PS50012	13.197	979	1030	IPR000408	Regulator of chromosome condensation, RCC1
PRINTS	PR00633	2.2E-8	1017	1033	IPR000408	Regulator of chromosome condensation, RCC1
PROSITE profile	PS50012	14.645	1031	1082	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF00415	2.3E-14	1032	1079	IPR000408	Regulator of chromosome condensation, RCC1
PRINTS	PR00633	2.2E-8	1033	1047	IPR000408	Regulator of chromosome condensation, RCC1
Pfam	PF13713	7.0E-18	1177	1211	IPR027988	Transcription factor BREVIS RADIX, N-terminal domain
Pfam	PF16627	2.9E-23	1218	1287	No hit	No description
Pfam	PF08381	1.2E-27	1294	1348	IPR013591	Brevis radix (BRX) domain
PROSITE profile	PS51514	31.561	1294	1349	IPR013591	Brevis radix (BRX) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1368 aa Download sequence Send to blast
MHEVQRSKAG EPQYNSEASC WSSMNLRLLH PRMEIRNQAR KWSEAKPLQK HKYPSEEMKS 60 QFAESVGLTE KQVSGWFCHR RLKDKRSLYV EASANGRQDH SSGIIQDRGS GLKQDSCGST 120 KQGDNRHDPR EVESRRFSGQ DFSAANLAYE HDCHHNRNYN DMDDTSSGSS LPLQHSFLRQ 180 RENHFDVVTP RYVLKNENIE QINLMGLRTR TGPSGYLKVK SKVENAAVTT VKRQLGRHYC 240 EDGPQLGVEF DLLPPGAFES STREPDNEPH YIGDASPLYS TDVPGIHNKN NSCTKYEAYS 300 SKMSLHTPDL DDTSFKIMHG FDHHENSISR RSKPMPLLPN HGNPFPGRKS SLDTKEVSTG 360 EISVYDGSRP YKMRANHDIE GGMRMDYISS RRMPPYDRKV TGGQRESWLC KSDDVSLADA 420 QIEHVKAENS NKTLMYGEYL EMEDRGLSRR MTKVAKRDQD EFLWQQYARK ASIAEPRPWT 480 KQIKSSLIRS DFLEFQFLYG NLIDEETSEL MFLLTILPFS LRTILELNWY GHLTHRASSH 540 AITALKKGAC LLKYGRRGRP KFCPFRLAND ESVLIWFSGK EEKHLKLSHV SRIISGQRTQ 600 IFQRYPQPEK EYQSFSLIYN HRSLDLNSSF PVQICKDKDE ADKWFSGLKA IISRGHQRKW 660 RTESRSDGIP SEANSPQTYT QRSSPLNSPF GSGDSLQKDD GDQLRLHSPY ESPPKNGLDK 720 AFSDVILHAV PPKSFFPSES VSGSVHSLIE SCFGVKMDSL LPKSLKAAVV LDVQNMACGG 780 RHAALVTKQE EIFSWGEESG GRLGHGVDSD VLRPKLIDSL SHTSIELVAC GHGNEVMNWP 840 LEDIHVSSIS CGPWHTAVVT SSGQLFTFGD GTFGVLGHGD RRSVSKPREV ESLKGLRTVR 900 AACGVWHTAA VVEVMVGSSS SSNCSLGKLF TWGDGDKGRL GHGDRESKLV PTCVAALVEP 960 NFCKVSCGHS LTVALTSSGH VYTMGSPVYG QLGNPQADGK LPIRVEGKLS KSFVEEIACG 1020 AYHVAVLTSR TEVYTWGKGT NGRLGHGDTH DRSSPTLVEA LKDKQVKSIA CGTNFTTAIC 1080 LHKWVSGIDH SLCSGSTSPI SRRASPPRSA TPIPTLGGFA SPKLNVEDTM RPNDSLSREV 1140 ITLRAQVENL SRKAQIQELE LGRTSKQLKE AITIAGEETA KCKAAKEVIK SLTAQLKDMA 1200 ERLPMGAVQN IKPPSIISFG SNPISHEVSN ACVDRLSGQI TFQASDANGS NGQLISNGSS 1260 IASNHSSGNT RQGQSETTTR NGSKMRESDS HNDNEQVEQD DPGVYITLTS LPGGSKDLKR 1320 VRFSRKRFSE KQAEQWWAEN RARVYERYNV RMVDKSSVGV GSEDFMH*

Sequence ? help Back to Top

Protein Sequence Length: 1368 aa Download sequence Send to blast

MHEVQRSKAG EPQYNSEASC WSSMNLRLLH PRMEIRNQAR KWSEAKPLQK HKYPSEEMKS  60
QFAESVGLTE KQVSGWFCHR RLKDKRSLYV EASANGRQDH SSGIIQDRGS GLKQDSCGST  120
KQGDNRHDPR EVESRRFSGQ DFSAANLAYE HDCHHNRNYN DMDDTSSGSS LPLQHSFLRQ  180
RENHFDVVTP RYVLKNENIE QINLMGLRTR TGPSGYLKVK SKVENAAVTT VKRQLGRHYC  240
EDGPQLGVEF DLLPPGAFES STREPDNEPH YIGDASPLYS TDVPGIHNKN NSCTKYEAYS  300
SKMSLHTPDL DDTSFKIMHG FDHHENSISR RSKPMPLLPN HGNPFPGRKS SLDTKEVSTG  360
EISVYDGSRP YKMRANHDIE GGMRMDYISS RRMPPYDRKV TGGQRESWLC KSDDVSLADA  420
QIEHVKAENS NKTLMYGEYL EMEDRGLSRR MTKVAKRDQD EFLWQQYARK ASIAEPRPWT  480
KQIKSSLIRS DFLEFQFLYG NLIDEETSEL MFLLTILPFS LRTILELNWY GHLTHRASSH  540
AITALKKGAC LLKYGRRGRP KFCPFRLAND ESVLIWFSGK EEKHLKLSHV SRIISGQRTQ  600
IFQRYPQPEK EYQSFSLIYN HRSLDLNSSF PVQICKDKDE ADKWFSGLKA IISRGHQRKW  660
RTESRSDGIP SEANSPQTYT QRSSPLNSPF GSGDSLQKDD GDQLRLHSPY ESPPKNGLDK  720
AFSDVILHAV PPKSFFPSES VSGSVHSLIE SCFGVKMDSL LPKSLKAAVV LDVQNMACGG  780
RHAALVTKQE EIFSWGEESG GRLGHGVDSD VLRPKLIDSL SHTSIELVAC GHGNEVMNWP  840
LEDIHVSSIS CGPWHTAVVT SSGQLFTFGD GTFGVLGHGD RRSVSKPREV ESLKGLRTVR  900
AACGVWHTAA VVEVMVGSSS SSNCSLGKLF TWGDGDKGRL GHGDRESKLV PTCVAALVEP  960
NFCKVSCGHS LTVALTSSGH VYTMGSPVYG QLGNPQADGK LPIRVEGKLS KSFVEEIACG  1020
AYHVAVLTSR TEVYTWGKGT NGRLGHGDTH DRSSPTLVEA LKDKQVKSIA CGTNFTTAIC  1080
LHKWVSGIDH SLCSGSTSPI SRRASPPRSA TPIPTLGGFA SPKLNVEDTM RPNDSLSREV  1140
ITLRAQVENL SRKAQIQELE LGRTSKQLKE AITIAGEETA KCKAAKEVIK SLTAQLKDMA  1200
ERLPMGAVQN IKPPSIISFG SNPISHEVSN ACVDRLSGQI TFQASDANGS NGQLISNGSS  1260
IASNHSSGNT RQGQSETTTR NGSKMRESDS HNDNEQVEQD DPGVYITLTS LPGGSKDLKR  1320
VRFSRKRFSE KQAEQWWAEN RARVYERYNV RMVDKSSVGV GSEDFMH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kci_A	2e-45	762	1102	18	383	Probable E3 ubiquitin-protein ligase HERC2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to phosphatidic acid and to phosphoinositides such as PtdIns3P, PtdIns(3,4)P(2), PtdIns(3,4,5)P(3) and PtdIns(4,5)P(2). Catalyzes guanine nucleotide exchange on specific Rab proteins. {ECO:0000269\|PubMed:11563980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472921.1	0.0	PREDICTED: uncharacterized protein LOC105790067 isoform X1
Swissprot	Q947D2	1e-149	PRAF1_ARATH; PH, RCC1 and FYVE domains-containing protein 1
TrEMBL	A0A3Q7JFP8	0.0	A0A3Q7JFP8_SOLLC; Uncharacterized protein
STRING	Gorai.004G014600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-58	HB-other family protein

Publications ? help Back to Top
Jensen RB,La Cour T,Albrethsen J,Nielsen M,Skriver K FYVE zinc-finger proteins in the plant model Arabidopsis thaliana: identification of PtdIns3P-binding residues by comparison of classic and variant FYVE domains. Biochem. J., 2001. 359(Pt 1): p. 165-73 [PMID:11563980] van Leeuwen W,Okrész L,Bögre L,Munnik T Learning the lipid language of plant signalling. Trends Plant Sci., 2004. 9(8): p. 378-84 [PMID:15358268] Briggs GC,Mouchel CF,Hardtke CS Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation. Plant Physiol., 2006. 140(4): p. 1306-16 [PMID:16514016] Moissiard G,Voinnet O RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(51): p. 19593-8 [PMID:17164336] Wywial E,Singh SM Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana. BMC Plant Biol., 2010. 10: p. 157 [PMID:20678208]