PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn214321

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 300aa MW: 34431.4 Da PI: 8.5939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn214321	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	67	120	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++a+e+LGG+e+AtPk ++++m+vkgLt++hvkSHLQ+YR+ Achn214321 67 PRLRWTPDLHLCFLQAIERLGGQERATPKLVVQVMNVKGLTIAHVKSHLQMYRS 120 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-29	63	121	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.196	63	123	IPR017930	Myb domain
SuperFamily	SSF46689	5.2E-15	65	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	67	122	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	68	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKEIGDIEVS KSHPLDMNIE DHEEGCDDHD DEDKPKTSAS SSNSVDEDGE KKVTSSGVRK 60 YIRSKVPRLR WTPDLHLCFL QAIERLGGQE RATPKLVVQV MNVKGLTIAH VKSHLQMYRS 120 KKIDSQGQVI NGRRYAIGRA DGFVDNFWQP FVLHHKLRPY NDVPWSDHKN WISSSCIADN 180 MNGAFYADHR KRSYESHYQH SRQWHGNGVE NVNYFFNNSF IPNSSWSTNR GQKCRTLKRR 240 AQDNDLIDLN PSLSVKKSRQ EEVKKTTWDD EVDSDLSLSL FSRAKKQNLA IDLNFPSIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080454.1	1e-108	two-component response regulator ARR14-like
TrEMBL	A0A2R6QSU5	0.0	A0A2R6QSU5_ACTCH; Myb family transcription factor
STRING	POPTR_0009s07890.1	6e-69	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-41	G2-like family protein