PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn212251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 30842.7 Da PI: 9.3787 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.2e-07 | 25 | 65 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41 +WT+eE +++ +a + + + +W ++a++++ g++ ++ Achn212251 25 KWTKEENKKFERALAIYDEKtpdRWLRVAAMIP-GKSVSDVL 65 8********************************.**998875 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.8e-13 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Achn212251 125 PWTEDEHRRFLMGLQKHGKGDWRNISRNFVISKTPTQVASHAQKY 169 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.997 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.32E-11 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-7 | 25 | 71 | No hit | No description |
Pfam | PF00249 | 5.2E-6 | 25 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.667 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-16 | 121 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 122 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 122 | 173 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.6E-11 | 122 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-9 | 125 | 170 | No hit | No description |
Pfam | PF00249 | 2.6E-11 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEFLYPPSYY PNLNLLMQES FSSTKWTKEE NKKFERALAI YDEKTPDRWL RVAAMIPGKS 60 VSDVLRQYVE LESDVSDIEA GLVPIPGYLA SSFTLEIGDD NGFYPFRKGS LLGRASDQEG 120 RKGVPWTEDE HRRFLMGLQK HGKGDWRNIS RNFVISKTPT QVASHAQKYF MRQNSSEKDK 180 RRPSINDITT IHLTHTDSSV KANRESPSLD KSNQNQANGG ATMVFDSNPS EIAKNGLKLQ 240 RGARLGTHVG LPLSSSQIQY TRYDLGQCLS LMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-15 | 22 | 88 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028072700.1 | 1e-115 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-83 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2R6RWU1 | 0.0 | A0A2R6RWU1_ACTCH; Transcription factor DIVARICATA like | ||||
STRING | EMJ20461 | 1e-101 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-85 | MYB family protein |
Publications ? help Back to Top | |||
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