PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn211821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 43979.5 Da PI: 6.0541 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 47 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c+++w + Achn211821 47 RGPWSPEEDAILSRLVSEFGARNWNAIARAIP-GRSGKSCRLWWINQ 92 89******************************.***********885 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 100 | 143 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++T eE+ +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ Achn211821 100 KPFTDEEEHIILAAHANHGNK-WSLIAKLLP-GRTDNAIKNHWNST 143 68*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.864 | 42 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-29 | 45 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 46 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 47 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-25 | 48 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-14 | 49 | 91 | No hit | No description |
PROSITE profile | PS51294 | 24.995 | 94 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-14 | 98 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 100 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-11 | 101 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 101 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MSSAIAIDGC VRICNTYNFD MNYIFDGGSG GDAVLESVGA DGGSRVRGPW SPEEDAILSR 60 LVSEFGARNW NAIARAIPGR SGKSCRLWWI NQLDPCVKHK PFTDEEEHII LAAHANHGNK 120 WSLIAKLLPG RTDNAIKNHW NSTMRRKYMG LKRVKLTSSN ILEVGSQDRT RASSEDTLSC 180 EALNFRSLEG KDVCLMERIH KHYEDKAQID EDHRAAVKDH PTLSHPVTHV GAFSIYNPVN 240 GPIPGSIVSR TVPVQGSIFQ TLKPETGICK FLEGVCDEPI VPLQCGHGCC SASSGGVSQR 300 SLLGPEFIEY EEPLPFSSHE FAAIATDLNS IAWIRSGLES TDTQVGDDAR GQRMPNGDPT 360 ALTGIFEQNI NQDNFRFEEA RKRLMGTMAS LSLPAEVEGL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-36 | 46 | 147 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-36 | 46 | 147 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028078108.1 | 1e-163 | transcription factor MYB25-like | ||||
TrEMBL | A0A346JM53 | 0.0 | A0A346JM53_ACTDE; MYB1 protein | ||||
STRING | XP_010262707.1 | 1e-142 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-84 | myb domain protein 109 |