PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn211821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 402aa    MW: 43979.5 Da    PI: 6.0541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn211821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-174792147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c+++w + 
       Achn211821 47 RGPWSPEEDAILSRLVSEFGARNWNAIARAIP-GRSGKSCRLWWINQ 92
                     89******************************.***********885 PP

2Myb_DNA-binding54.42.8e-17100143247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++T eE+ +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
       Achn211821 100 KPFTDEEEHIILAAHANHGNK-WSLIAKLLP-GRTDNAIKNHWNST 143
                      68*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8644293IPR017930Myb domain
SuperFamilySSF466899.73E-2945140IPR009057Homeodomain-like
SMARTSM007175.8E-154695IPR001005SANT/Myb domain
PfamPF002492.0E-164792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2548100IPR009057Homeodomain-like
CDDcd001673.03E-144991No hitNo description
PROSITE profilePS5129424.99594148IPR017930Myb domain
SMARTSM007173.6E-1498146IPR001005SANT/Myb domain
PfamPF002494.5E-15100142IPR001005SANT/Myb domain
CDDcd001675.97E-11101141No hitNo description
Gene3DG3DSA:1.10.10.601.1E-23101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSSAIAIDGC VRICNTYNFD MNYIFDGGSG GDAVLESVGA DGGSRVRGPW SPEEDAILSR  60
LVSEFGARNW NAIARAIPGR SGKSCRLWWI NQLDPCVKHK PFTDEEEHII LAAHANHGNK  120
WSLIAKLLPG RTDNAIKNHW NSTMRRKYMG LKRVKLTSSN ILEVGSQDRT RASSEDTLSC  180
EALNFRSLEG KDVCLMERIH KHYEDKAQID EDHRAAVKDH PTLSHPVTHV GAFSIYNPVN  240
GPIPGSIVSR TVPVQGSIFQ TLKPETGICK FLEGVCDEPI VPLQCGHGCC SASSGGVSQR  300
SLLGPEFIEY EEPLPFSSHE FAAIATDLNS IAWIRSGLES TDTQVGDDAR GQRMPNGDPT  360
ALTGIFEQNI NQDNFRFEEA RKRLMGTMAS LSLPAEVEGL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-36461473104C-Myb DNA-Binding Domain
1msf_C1e-36461473104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078108.11e-163transcription factor MYB25-like
TrEMBLA0A346JM530.0A0A346JM53_ACTDE; MYB1 protein
STRINGXP_010262707.11e-142(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-84myb domain protein 109