PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn211261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 459aa    MW: 51329.1 Da    PI: 5.2077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn211261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.82.5e-561513472204
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L+++A++++s++l+la  +L+rl+++  sp+g+++qR+a+yf+eAL + l++         ++++t++++++++++a+k f +vsPi+ fs +taN
  Achn211261 151 VDDLIRAADCFESNELQLAGVILERLNHQlPSPTGKALQRAAFYFKEALISLLTG---------STRSTRSSEVVQAIKAYKNFANVSPIIMFSTFTAN 240
                 678************************998*************************.........666667777************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qaIleav+g+  +H++Df+i+ G+QW++++++ a+R+     ++pslRiT+v+++e     e + ++++L++fA  l++ fe+++++++++e l+++++
  Achn211261 241 QAILEAVDGSMLIHVVDFEIGFGGQWASFMREVAERAesrrVNSPSLRITAVVPEE--YGIESRLIRDNLNQFACDLKIGFEIEFVLVQTFEFLSFKAI 337
                 **********************************9996555669**********66..8899999********************************** PP

        GRAS 195 rvkpgEalaV 204
                 r+ +gE++aV
  Achn211261 338 RFINGEKTAV 347
                 *********9 PP
2GRAS80.72.5e-25350457261374
        GRAS 261 leyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                 le+ys++++sl +a+++  +++ + +E +ll+++i  +v ++ ++       + +Wre++ +aG+++v ls++a  qa++ll++v+++g+ v ++++++
  Achn211261 350 LEFYSTVMESLeAASVGGGDDWIRRIEIFLLRPKIFAAVEAARRR-------APTWREAFAAAGLRAVVLSQFADFQAECLLSEVQVRGFDVAKRQAEM 441
                 89*********8899**********************99887775.......899******************************************** PP

        GRAS 359 vlgWkdrpLvsvSaWr 374
                 vl+W++r+Lv++SaWr
  Achn211261 442 VLCWQQRALVATSAWR 457
                 ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.744124458IPR005202Transcription factor GRAS
PfamPF035148.6E-54151347IPR005202Transcription factor GRAS
PfamPF035148.7E-23350457IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MKVPFTTQTH QSPNAKVRTT SLNEPKSVLD LVRSSSPSPA VNKPTPKSEV SALSESLFQS  60
DDGSLHSEDQ ILNNLEDWDS LMRELGLHDD STRIPQFNHL DSQLLPEFPP SHSVVPTDFS  120
LSSDQFHNHN FNSVALCNDF HHMNNDDFHF VDDLIRAADC FESNELQLAG VILERLNHQL  180
PSPTGKALQR AAFYFKEALI SLLTGSTRST RSSEVVQAIK AYKNFANVSP IIMFSTFTAN  240
QAILEAVDGS MLIHVVDFEI GFGGQWASFM REVAERAESR RVNSPSLRIT AVVPEEYGIE  300
SRLIRDNLNQ FACDLKIGFE IEFVLVQTFE FLSFKAIRFI NGEKTAVLGL EFYSTVMESL  360
EAASVGGGDD WIRRIEIFLL RPKIFAAVEA ARRRAPTWRE AFAAAGLRAV VLSQFADFQA  420
ECLLSEVQVR GFDVAKRQAE MVLCWQQRAL VATSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-1615645625378Protein SCARECROW
5b3h_A5e-1615645624377Protein SCARECROW
5b3h_D5e-1615645624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076229.10.0scarecrow-like protein 15
SwissprotO232101e-126SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2R6PAL90.0A0A2R6PAL9_ACTCH; Scarecrow-like protein
STRINGXP_009803270.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-117GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]