PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn210781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 593aa    MW: 65079.6 Da    PI: 5.0582
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn210781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.84.1e-1102265923374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++Ll+cA+ +s+++  +a   L rl+el s++gdpm+R+a+ fteAL +r+ +   ++ ++ + se++   s+e   ++k++++++P+ kf+hltaNqa
  Achn210781 226 KALLDCAK-LSESEPDKAMISLVRLRELLSEHGDPMERVAFQFTEALFSRIKH---QTENTPTISEAT---SEELSLSYKVLNDACPYSKFAHLTANQA 317
                 78******.66678999999********************************9...455444555555...899999********************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ile +++++++Hi+Df+i qG+QW+aLlqaLa+Rp+g+p  +Ri g+ +p+ g   + +l +tg+rL++fA+ lg++fef++ + + ++dl+ +++rv+
  Achn210781 318 ILETTQRAKKIHIVDFGIVQGIQWAALLQALATRPAGKPeFIRISGIPAPALGnsPTAALFATGNRLRDFAKLLGLNFEFEP-ILTPIQDLNGSSFRVD 415
                 ***********************************7766599*******999988999************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+E+laVn++lql++llde++   +   + L l ksl+P +v++ e ea +n+ +F++rf++al yysa+f+sle +l r+s er+ vEr l+gr+i  
  Achn210781 416 PDEVLAVNFMLQLYNLLDETHLGVE---TALGLAKSLNPSIVTLGEYEAALNRVDFFRRFSNALVYYSAVFESLEPNLTRDSPERTQVERLLFGRRIAG 511
                 *****************98888777...9********************************************************************** PP

        GRAS 297 vvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 v+a  g    rer+ ++ +Wr  +e+aGF++v+ls++a +qa+ ll +++ s  +++ +++  ++ l W++ pL++vSaWr
  Achn210781 512 VIAPDGPGtGRERMDEKDQWRVLMENAGFESVALSHYAISQADILLWNYNySSMFSLMKSEPGFLsLAWNKVPLLTVSAWR 592
                 *****997679***************************************9999**9998888877**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.416198570IPR005202Transcription factor GRAS
PfamPF035141.4E-107226592IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGPFFRCGIF GVVKLFHLLW APPLLSISPF GLLLVVQPMG PQAVHKERTQ FFQHSPWSTT  60
HQSLSSSPTL GYGFSDPFQI AGAADSGEPG FHFPNLEHQS SAFRFADFGG GSGGEFDSDE  120
WMESLMGGGD STESSNLASS WHSSADFCFY NSDPFSACPS RLIIASSPPS DLNRVIFSDS  180
LKNTNLLQAP SSPPWAPTSP SPVKNEVISG SLTTSPEADS SKPLFKALLD CAKLSESEPD  240
KAMISLVRLR ELLSEHGDPM ERVAFQFTEA LFSRIKHQTE NTPTISEATS EELSLSYKVL  300
NDACPYSKFA HLTANQAILE TTQRAKKIHI VDFGIVQGIQ WAALLQALAT RPAGKPEFIR  360
ISGIPAPALG NSPTAALFAT GNRLRDFAKL LGLNFEFEPI LTPIQDLNGS SFRVDPDEVL  420
AVNFMLQLYN LLDETHLGVE TALGLAKSLN PSIVTLGEYE AALNRVDFFR RFSNALVYYS  480
AVFESLEPNL TRDSPERTQV ERLLFGRRIA GVIAPDGPGT GRERMDEKDQ WRVLMENAGF  540
ESVALSHYAI SQADILLWNY NYSSMFSLMK SEPGFLSLAW NKVPLLTVSA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462215921375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072744.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2R6PAK20.0A0A2R6PAK2_ACTCH; Scarecrow-like protein
STRINGEOX911130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein