PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn210031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 417aa    MW: 45747.2 Da    PI: 5.3122
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn210031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.8e-05434535
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                +C+ ++e + + +C+++   lC +C  + H+
  Achn210031  4 MCDFCGELRSIVYCRSDAASLCFSCDHSVHS 34
                6******99*******************995 PP
2zf-B_box22.42.6e-074788540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +C++++++++ + C + +  lC++C   +H g      H+++
  Achn210031 47 VCDRCNSQPAFIRCVEEKISLCQNCDWLGHAGstsasrHQMQ 88
                8*****************************888888888765 PP
3CCT62.31.6e-21359402144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a++RYkeK+k RkF+Kk+rY+sRKa+A+ R RvKGrFvk+ 
  Achn210031 359 RSDAVMRYKEKKKARKFDKKVRYASRKARADVRRRVKGRFVKAG 402
                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.001147IPR000315B-box-type zinc finger
SMARTSM003362.3E-5447IPR000315B-box-type zinc finger
CDDcd000212.36E-5447No hitNo description
PROSITE profilePS501198.834390IPR000315B-box-type zinc finger
CDDcd000217.01E-44778No hitNo description
SMARTSM003363.34890IPR000315B-box-type zinc finger
PfamPF062033.0E-16359401IPR010402CCT domain
PROSITE profilePS5101715.309359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGYMCDFCGE LRSIVYCRSD AASLCFSCDH SVHSANALSR RHFRTLVCDR CNSQPAFIRC  60
VEEKISLCQN CDWLGHAGST SASRHQMQAV NCYSGCPSAA ELSTIGLFLS DDPSVGDSTC  120
EKEMSFMRIS DKSVTNCGDS LQSKDGQDVS VLVKVNDLKN IDKLRFWMGS SSMPQLNIKP  180
KTVDQPVGLA NSTSSKMFCP GTKGLAHFED DGFYEDFNMD EFDLNIENYD EDLFGIALNN  240
PEQFFGNDEI DSSFGVKDMS GADLKCQGTC AAEGSSIGQG NAVQPACSNT VSADSVMSSK  300
TNPNLCFSQS IQSSLSFSGL TGESNVGDYQ ECSASLMLLM EEHPWCPPCP ESSLPSTSRS  360
DAVMRYKEKK KARKFDKKVR YASRKARADV RRRVKGRFVK AGDAYDYDPL SQTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121845.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2R6PTK40.0A0A2R6PTK4_ACTCH; Zinc finger protein like
STRINGVIT_12s0057g01350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-100CONSTANS-like 9