PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn209451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 390aa    MW: 42977.7 Da    PI: 7.5659
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn209451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.34.8e-2279122144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+ep+rCrRtD KkWRCsr+v +++k+CErH h+ r rsrk++e
  Achn209451  79 DPEPWRCRRTDEKKWRCSRDVAPNQKYCERHAHKTRPRSRKPVE 122
                 79***************************************987 PP
2QLQ57.44.3e-202055237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                aFTa+Q+q+L++Q  +yKy++a++PvPpeLl +i+k
  Achn209451 20 AFTASQWQELERQTAIYKYMMASLPVPPELLIPISK 55
                8********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.3E-121955IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-142053IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9442055IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.49979123IPR014977WRC domain
PfamPF088792.4E-1780122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQRTESFPGG NMPAGAAKVA FTASQWQELE RQTAIYKYMM ASLPVPPELL IPISKSPSGL  60
SPSQSNVSGV DLRFSRSSDP EPWRCRRTDE KKWRCSRDVA PNQKYCERHA HKTRPRSRKP  120
VELPSHNTNS TNTNTNMNAT HHPLVDLPVN ATVQPFQKTI FHIPTNTVVS ASTYAQPRCT  180
EWFMTGDPIP GSTSNQQWKQ LMQSSSREGF KRYNEENYRS GSFFQQHYGE QHESMDTNLY  240
FAMDDGQRLQ NQQPSDQYGS LLGPKVGCLL GGINTDQTQP TMRFIDAWSS AERKEMNEFS  300
NKYSGSSSGK LQLSSLTLSM SGGVGMDEEI ANSQTGLGGP LGEALCLGVA GTAKEVSNVP  360
SPHGYSNSTT TTSCSISSCE DSSHGLHFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118902.11e-123growth-regulating factor 8
TrEMBLA0A2R6Q8M80.0A0A2R6Q8M8_ACTCH; Growth-regulating factor like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-32growth-regulating factor 8