PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn207851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 201aa MW: 22325.8 Da PI: 6.3978 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.2e-11 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + d+ + +a + + + +W++Ia++++ g+t +++k+++ Achn207851 11 SWTRDQDKAFENALAIYSEDsvdQWEKIAAMVP-GKTVEEIKNHY 54 7********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.5e-12 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ +v+++G+g+W++I+ R + q+ s+ qky Achn207851 117 AWTEEEHRLFLLGVEKYGKGDWRSISLNSVVPRMPTQVASHAQKY 161 6*************************999977************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-6 | 4 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.477 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 7.5E-10 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.17E-12 | 10 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-9 | 11 | 58 | No hit | No description |
Pfam | PF00249 | 1.2E-8 | 11 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.504 | 109 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.66E-13 | 113 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-8 | 114 | 164 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-14 | 115 | 163 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 8.20E-10 | 117 | 162 | No hit | No description |
Pfam | PF00249 | 7.3E-10 | 117 | 161 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 117 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSNRTCNSS SWTRDQDKAF ENALAIYSED SVDQWEKIAA MVPGKTVEEI KNHYVILLED 60 INDFTLPHYV PSVNDYTNIS GDFGVGKMGS HYGQMQSDSL HGGKSSRLDQ EWRRGIAWTE 120 EEHRLFLLGV EKYGKGDWRS ISLNSVVPRM PTQVASHAQK YFIPLSSANK EGRRSSIHDI 180 TSVGGGDTST LRGPITGKID * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094516.1 | 3e-95 | transcription factor SRM1 | ||||
Refseq | XP_028094517.1 | 3e-95 | transcription factor SRM1 | ||||
Refseq | XP_028094518.1 | 3e-95 | transcription factor SRM1 | ||||
Refseq | XP_028094519.1 | 3e-95 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 2e-64 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2R6S2X6 | 1e-121 | A0A2R6S2X6_ACTCH; Transcription factor DIVARICATA like | ||||
STRING | XP_010067021.1 | 4e-81 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4454 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 7e-67 | MYB family protein |
Publications ? help Back to Top | |||
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