 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Achn207421 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 288aa MW: 32316 Da PI: 6.7912 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Achn207421 | genome | IKGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 299 | 1.8e-91 | 1 | 286 | 32 | 300 |
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse.pqledsave 125
+aerd++ire+n+al e++ a+aerdma +qrd+a+aern a+ erd++l+al+++e s++ s +++g + +g+ks+ +qq++ pq ++ ++
Achn207421 1 MAERDSAIREKNMALDERRRAFAERDMAMMQRDAAIAERNSAVEERDKALAALQFQESSMNenhiSPDSPGNVMARGAKSLYYHQQMHPiPQQVETGYD 99
78********************************************************99988665667788999999999988886657555555555 PP
GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..............skaekksidlvlngvslDestlPv 210
re + +++p +++ + +++k ++k ++a+++k + +kk+ k+++k k+ ++ s+ + +k+ dl+ln++++Dest+P+
Achn207421 100 PRE--IPTSNPFQSTGVTYETEKLPRKAKQAEQTKGSSTKKPSKSPRKGKRVSDDISHGWKseqdlddneedldeELGLWKDDDLGLNQINFDESTMPA 196
333..33333333333333344444444444444444444444433333222222222211233444556666668899******************** PP
GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
PvCsCtG + CYkWGnGGWqSaCCtt++SvyPLP+++++r aR++grKmS++af kl +L+aeG+dls+p++LkdhW kHGtn++ t
Achn207421 197 PVCSCTGLHQPCYKWGNGGWQSACCTTAMSVYPLPQMSDKRYARVGGRKMSGSAFAKLFHRLTAEGHDLSTPLELKDHWSKHGTNRYSTA 286
***************************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MAERDSAIRE KNMALDERRR AFAERDMAMM QRDAAIAERN SAVEERDKAL AALQFQESSM 60
NENHISPDSP GNVMARGAKS LYYHQQMHPI PQQVETGYDP REIPTSNPFQ STGVTYETEK 120
LPRKAKQAEQ TKGSSTKKPS KSPRKGKRVS DDISHGWKSE QDLDDNEEDL DEELGLWKDD 180
DLGLNQINFD ESTMPAPVCS CTGLHQPCYK WGNGGWQSAC CTTAMSVYPL PQMSDKRYAR 240
VGGRKMSGSA FAKLFHRLTA EGHDLSTPLE LKDHWSKHGT NRYSTAK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
