PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn207251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SRS | ||||||||
Protein Properties | Length: 182aa MW: 18758.6 Da PI: 4.9333 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 40.6 | 8.7e-13 | 12 | 41 | 125 | 154 |
DUF702 125 dgeeelaYqtavsigGhvfkGiLydqGlee 154 ++e+ +aYqtav+igGh+fkGiLydqG ++ Achn207251 12 NKENWYAYQTAVNIGGHLFKGILYDQGSDD 41 56778**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.0E-10 | 12 | 40 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 4.1E-13 | 12 | 38 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MYTSECCEGG RNKENWYAYQ TAVNIGGHLF KGILYDQGSD DHYMLSPGAN TSSSGGLNLI 60 AATSNPPPPP PPPFAAAAAS TCTAAMAAGS PSFIHDPSHN VYQPPLNTFI SAVEATTVVA 120 SLLLRAYCLV APPLPCFLAI PCLSVTTIAA LLCLRVTAAT VLPLVALFVD AGACWTLEIS 180 G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6RIR5 | 4e-24 | A0A2R6RIR5_ACTCH; Protein SHI RELATED SEQUENCE like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-10 | SHI-related sequence 7 |