PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn206771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 20670 Da PI: 5 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.4 | 1.8e-12 | 2 | 69 | 67 | 128 |
NAM 67 kyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +y+tg+rk r+++ + W++tg++k+v+ +g++ g+kk++v+y + k+ekt+ vmh+y++ Achn206771 2 AYNTGTRKGRKIQvvdfgDVLWHKTGRTKPVIL-DGAQQGCKKIMVLYvsPIKGGKAEKTNRVMHQYHF 69 588999999985555555889************.999***********6533777778*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.233 | 1 | 93 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-11 | 2 | 74 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAYNTGTRKG RKIQVVDFGD VLWHKTGRTK PVILDGAQQG CKKIMVLYVS PIKGGKAEKT 60 NRVMHQYHFG TAKDEKGGRH NEMEHVEEKT EAPYDKPNYQ DSLPEENLAD PMEDNNDNQT 120 EENSKRWDRP EFLKKDLEEC QDLVLDPANL ELDTTPDFRL SQLEFGSQES FLAWGGGKVV 180 N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634004.1 | 3e-47 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3 | ||||
Swissprot | Q6NQK2 | 7e-29 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2R6PH39 | 6e-48 | A0A2R6PH39_ACTCH; NAC domain-containing protein | ||||
STRING | XP_009614314.1 | 1e-34 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-31 | NAC family protein |