PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 305aa    MW: 33222.6 Da    PI: 4.7506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16214250135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Achn204501 214 CAHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 250
                 *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.68179114IPR010399Tify domain
SMARTSM009791.1E-979114IPR010399Tify domain
PfamPF062001.0E-1083113IPR010399Tify domain
PfamPF062039.0E-16146188IPR010402CCT domain
PROSITE profilePS5101713.017146188IPR010402CCT domain
SMARTSM004014.0E-13208261IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183208265IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-11210258No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15212255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.37E-15213263No hitNo description
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
PfamPF003203.5E-14214250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPETNLQPPM YDADAMNLQQ QQQQQQQQQR SQIEDEEDDD VAESIDDPQI RFEAHALHDG  60
GDHPLALYVP ESEIPPATGV GGTDQLSLSF QGEVYVFDAV SPEKVQAVLL LLGGYEVPTG  120
IPTTAVAPQN HRALDDFPER SSQPQRVASL NRFREKRKER CFEKKIRYNV RKEVALRMQR  180
RKGQFTSSKT ISEEVISDGN ASQGSGQEER ETSCAHCGIS SKSTPMMRRG PAGPRTLCNA  240
CGLKWANKGV LRDLSKVSAA GIEDHTAKVT EQSESEANNS DVVPSASDII NASNGDNSAA  300
TAGQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093061.11e-166GATA transcription factor 28-like isoform X2
SwissprotQ8H1G01e-77GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2R6RCB70.0A0A2R6RCB7_ACTCH; GATA transcription factor
STRINGEOX986511e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-70ZIM-like 1