PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn202691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 1735aa    MW: 190219 Da    PI: 5.8784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn202691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.5e-08792833346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WTteE e++ d  + +G++ ++ +a+ +  ++t  +c+++++ 
       Achn202691 792 PWTTEEKEIFMDKLAIFGKD-FRMVASFLD-HKTTADCIEFYYR 833
                      8*****************99.*********.**********985 PP

2Myb_DNA-binding26.51.5e-0810111050344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                        WT +E  ++++av  +G++ ++ I+r++  +R++ +c+ ++
       Achn202691 1011 HWTDDEKSIFIQAVSSYGKD-FTMISRCVR-TRSRDECIVFF 1050
                       5*****************99.*********.*******8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-13776836IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-4784835IPR009057Homeodomain-like
PROSITE profilePS5129315.328788839IPR017884SANT domain
SMARTSM007173.6E-7789837IPR001005SANT/Myb domain
PROSITE profilePS5129310.96910071058IPR017884SANT domain
SMARTSM007173.0E-710081056IPR001005SANT/Myb domain
SuperFamilySSF466897.65E-1010091058IPR009057Homeodomain-like
PfamPF002492.8E-610111050IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-410111050IPR009057Homeodomain-like
CDDcd001674.12E-610121050No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1735 aa     Download sequence    Send to blast
MPPEPLPWDR RDFFKERKRE RSSESIGSVS RWRENPHHGR EFFRSRPPGH GKQGGWHNFS  60
QEPGHGFMPS RSNEKIFGDE NCRPYGSRAD GKFSRNGREN RGSFSQKDWR GQSLENGSPP  120
NGPGRSIPVS DQRSVDDMLP CNSHPNSESA NASDQIHSKG QHDKTDSVNG LGTGQRLESE  180
NSMGSIDWKP LKWSRSGSLT SRGSGFSHSS SSKSMGVDSS EVNAEVEPRD GTPVRSPSGD  240
AVACATSAAP SEETNSRKKA RLGWGEGLAK YEKKKVDGPD DSATNHGMVV CVNTEPLRSH  300
VPILSDKSPR FTAFSECASP GTPPSSVGCS SSPGIEDKPP VKGENIDSDT GKLSGSPRLL  360
SQNRVDGIAF NLENTEAIPI ANLSSSLGDL LQSDNPDSVD SSFFERSTAM NKLLVWKGDV  420
LKALEMTESE IDLLENELKS LTSESRNCWP CLAGPSPLQG ECQAKPCEEL LNTGGGLRPA  480
PLQLVSSGGM IAKEAIGGLE EVHGQLKDED IDSPGTVTSK FVEPHRSVNT DAMPESVKRG  540
GSNLDLNASK SGNQEVTCSV YVSNGEKEES LSDCDTGGQL MAYKSCTAPV GVSLHSAREE  600
KLYDLILASN KDSASKASDV FNKLLPSDRC RVNIFTASSV SSSRNDPLIQ EKFATRKRFV  660
RFKQRVITLK FRAFQHLWKE DMRLLSIRKH HTKSQKRLEL SSQTPHNYQK HRSSIRSRFS  720
SPAGNLSLVP TVEIIKFTSK LLSDSQVKPY RNSLKMPALI LEEEKMVSRF ISSNGLVEDP  780
YAVEKERAAI NPWTTEEKEI FMDKLAIFGK DFRMVASFLD HKTTADCIEF YYRNHKSDWF  840
VKIKKKPELS GQGKLCSTNN YLVTTGKRWN REMNATSLDM LGAAIAANAD DGRQNQQKCK  900
ARFVMGETTV YRAPRGDDGI VQRSGNLDSF SNESERETVA ADVLVGICGS ISSEAMSSCI  960
TSSFEPGESY KDWKYQKVGF STRRPLTPEV AQNVDDGTCS DESCGEMDPT HWTDDEKSIF  1020
IQAVSSYGKD FTMISRCVRT RSRDECIVFF SKARKCLGLD MVRSRPGNEE MPASDNSNGG  1080
GGDNEDACVV ETGSVICGEI SGSKMDEDVM LSDLNINPCE SDPTEMVNVQ TDLNRLEELI  1140
VNNGTDGIDC KDPKLQSGNM VTEDWQADGK QELPFDGKSK MENDVVSMTV SGQAHEDTVL  1200
LPDTLTGGDG VAVSAAEGEI IDIGPELEGQ QLVSENNSND KEEENGGAST SGPSDLNSIE  1260
GSHMKWNSSN IAAVTNTPVE FGGDPTQEPM ISLEFNTAQK PHGISMEQIV PLTNANSPAN  1320
QHEKTLNPNT ASALDLEKIS DKQSQKSASL DDHNPHQSGD TVLGRVNSGQ ILRGYPLRLS  1380
TKKEVNGDSS SLQSFSKECL LQKCNSLQTQ CLVAELPFLS QEQRTDHSQP PPCSLSDTEK  1440
PCRNGDLKLF GKILTYPKSQ QQNEDISVNH ENKDKGVQPP KLSTKTFNLK FNGTHSVDGN  1500
SVPPKLDRIN YLGLENLPMR SYGYWDGTRI RTGFSSIPDS AILLAKYPAA FSNYSSSSDS  1560
EQQRLHSSAR SNERNLKGVS VFSTREKNSS NGVADYQLYR NREGRVQPFT VDMKQRQEML  1620
LSEMQRRNGY EAVSNIPQAT KGMVGINMVG RGGGLVGGAC TTGVSDPVAA IKMHYAKAEQ  1680
YSGQTASIVR EDESWRGSST LGKWIHTLIT QDLHEDSTPT IDHHRLRPPP QEFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-15756838991NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-15756838991NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107780.10.0uncharacterized protein LOC114306686
TrEMBLA0A2R6RTU50.0A0A2R6RTU5_ACTCH; Nuclear receptor corepressor 1 like
STRINGVIT_13s0019g04010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-135MYB family protein