PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn202691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 1735aa MW: 190219 Da PI: 5.8784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.5e-08 | 792 | 833 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WTteE e++ d + +G++ ++ +a+ + ++t +c+++++ Achn202691 792 PWTTEEKEIFMDKLAIFGKD-FRMVASFLD-HKTTADCIEFYYR 833 8*****************99.*********.**********985 PP | |||||||
2 | Myb_DNA-binding | 26.5 | 1.5e-08 | 1011 | 1050 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT +E ++++av +G++ ++ I+r++ +R++ +c+ ++ Achn202691 1011 HWTDDEKSIFIQAVSSYGKD-FTMISRCVR-TRSRDECIVFF 1050 5*****************99.*********.*******8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.87E-13 | 776 | 836 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 784 | 835 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.328 | 788 | 839 | IPR017884 | SANT domain |
SMART | SM00717 | 3.6E-7 | 789 | 837 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.969 | 1007 | 1058 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-7 | 1008 | 1056 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.65E-10 | 1009 | 1058 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-6 | 1011 | 1050 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-4 | 1011 | 1050 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.12E-6 | 1012 | 1050 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1735 aa Download sequence Send to blast |
MPPEPLPWDR RDFFKERKRE RSSESIGSVS RWRENPHHGR EFFRSRPPGH GKQGGWHNFS 60 QEPGHGFMPS RSNEKIFGDE NCRPYGSRAD GKFSRNGREN RGSFSQKDWR GQSLENGSPP 120 NGPGRSIPVS DQRSVDDMLP CNSHPNSESA NASDQIHSKG QHDKTDSVNG LGTGQRLESE 180 NSMGSIDWKP LKWSRSGSLT SRGSGFSHSS SSKSMGVDSS EVNAEVEPRD GTPVRSPSGD 240 AVACATSAAP SEETNSRKKA RLGWGEGLAK YEKKKVDGPD DSATNHGMVV CVNTEPLRSH 300 VPILSDKSPR FTAFSECASP GTPPSSVGCS SSPGIEDKPP VKGENIDSDT GKLSGSPRLL 360 SQNRVDGIAF NLENTEAIPI ANLSSSLGDL LQSDNPDSVD SSFFERSTAM NKLLVWKGDV 420 LKALEMTESE IDLLENELKS LTSESRNCWP CLAGPSPLQG ECQAKPCEEL LNTGGGLRPA 480 PLQLVSSGGM IAKEAIGGLE EVHGQLKDED IDSPGTVTSK FVEPHRSVNT DAMPESVKRG 540 GSNLDLNASK SGNQEVTCSV YVSNGEKEES LSDCDTGGQL MAYKSCTAPV GVSLHSAREE 600 KLYDLILASN KDSASKASDV FNKLLPSDRC RVNIFTASSV SSSRNDPLIQ EKFATRKRFV 660 RFKQRVITLK FRAFQHLWKE DMRLLSIRKH HTKSQKRLEL SSQTPHNYQK HRSSIRSRFS 720 SPAGNLSLVP TVEIIKFTSK LLSDSQVKPY RNSLKMPALI LEEEKMVSRF ISSNGLVEDP 780 YAVEKERAAI NPWTTEEKEI FMDKLAIFGK DFRMVASFLD HKTTADCIEF YYRNHKSDWF 840 VKIKKKPELS GQGKLCSTNN YLVTTGKRWN REMNATSLDM LGAAIAANAD DGRQNQQKCK 900 ARFVMGETTV YRAPRGDDGI VQRSGNLDSF SNESERETVA ADVLVGICGS ISSEAMSSCI 960 TSSFEPGESY KDWKYQKVGF STRRPLTPEV AQNVDDGTCS DESCGEMDPT HWTDDEKSIF 1020 IQAVSSYGKD FTMISRCVRT RSRDECIVFF SKARKCLGLD MVRSRPGNEE MPASDNSNGG 1080 GGDNEDACVV ETGSVICGEI SGSKMDEDVM LSDLNINPCE SDPTEMVNVQ TDLNRLEELI 1140 VNNGTDGIDC KDPKLQSGNM VTEDWQADGK QELPFDGKSK MENDVVSMTV SGQAHEDTVL 1200 LPDTLTGGDG VAVSAAEGEI IDIGPELEGQ QLVSENNSND KEEENGGAST SGPSDLNSIE 1260 GSHMKWNSSN IAAVTNTPVE FGGDPTQEPM ISLEFNTAQK PHGISMEQIV PLTNANSPAN 1320 QHEKTLNPNT ASALDLEKIS DKQSQKSASL DDHNPHQSGD TVLGRVNSGQ ILRGYPLRLS 1380 TKKEVNGDSS SLQSFSKECL LQKCNSLQTQ CLVAELPFLS QEQRTDHSQP PPCSLSDTEK 1440 PCRNGDLKLF GKILTYPKSQ QQNEDISVNH ENKDKGVQPP KLSTKTFNLK FNGTHSVDGN 1500 SVPPKLDRIN YLGLENLPMR SYGYWDGTRI RTGFSSIPDS AILLAKYPAA FSNYSSSSDS 1560 EQQRLHSSAR SNERNLKGVS VFSTREKNSS NGVADYQLYR NREGRVQPFT VDMKQRQEML 1620 LSEMQRRNGY EAVSNIPQAT KGMVGINMVG RGGGLVGGAC TTGVSDPVAA IKMHYAKAEQ 1680 YSGQTASIVR EDESWRGSST LGKWIHTLIT QDLHEDSTPT IDHHRLRPPP QEFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 4e-15 | 756 | 838 | 9 | 91 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 4e-15 | 756 | 838 | 9 | 91 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028107780.1 | 0.0 | uncharacterized protein LOC114306686 | ||||
TrEMBL | A0A2R6RTU5 | 0.0 | A0A2R6RTU5_ACTCH; Nuclear receptor corepressor 1 like | ||||
STRING | VIT_13s0019g04010.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-135 | MYB family protein |