PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn202121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 391aa MW: 44339.7 Da PI: 5.3676 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 159 | 205 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l Achn202121 159 KGQWTIEEDRLLIHLVEKYGVRKWSHIAQMLK-GRIGKQCRERWHNHL 205 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.6e-17 | 211 | 253 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++a+ + G++ W+ Ia++++ gRt++++k++w+ Achn202121 211 KDTWSEEEDRVLIQAHLEVGNK-WAEIAKRLP-GRTENSIKNHWN 253 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.556 | 154 | 209 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.59E-31 | 157 | 252 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 158 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 160 | 212 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-18 | 162 | 219 | No hit | No description |
CDD | cd00167 | 3.46E-14 | 162 | 205 | No hit | No description |
PROSITE profile | PS51294 | 21.855 | 210 | 260 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 210 | 258 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 213 | 256 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 213 | 258 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MELDNKFRED LNFQQQRPPL LLPNNYLKPE IEEDGFCFES CQSKNFFQDF DDHFSFTGSS 60 LNSETACLDP FDPFANISSL NFDDFYESKP FDECGDNGGG GGNCVVFNCE DAKPVSFMIP 120 DEGSCVTAEN GYYKEGGGGK KNGHTRKQGK GRKKSNSVKG QWTIEEDRLL IHLVEKYGVR 180 KWSHIAQMLK GRIGKQCRER WHNHLRPDIK KDTWSEEEDR VLIQAHLEVG NKWAEIAKRL 240 PGRTENSIKN HWNATKRRQY SRRKCRTKFP RPSSLLQNYI KSLNLDRPKS TTNPPPPPPP 300 PPPPAAAAAA AADFDRLVPD FDLEVPGWDN LFEESGSIVE SLLDHIHMPN CDEKGFDMSL 360 DLDCSFMEEG SGGEVKKEMD LVEMITQVNL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-48 | 158 | 259 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-48 | 158 | 259 | 3 | 104 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059763.1 | 1e-146 | transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 9e-85 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A438F0A5 | 1e-131 | A0A438F0A5_VITVI; Transcription factor MYB98 | ||||
STRING | VIT_17s0000g08550.t01 | 1e-132 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-83 | myb domain protein 98 |
Publications ? help Back to Top | |||
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