PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn202071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 902aa    MW: 99477.7 Da    PI: 5.0559
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn202071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.8e-097637962248
                      T........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  22 g........tWktIartmgkgRtlkqcksrwqkyl 48 
                      +         W++Ia +++ gRt++q+k++w+++l
       Achn202071 763 EtaaessmiKWSLIAGRVP-GRTDNQVKNHWNSHL 796
                      3556666667*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.102.1E-15203382IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484525.52E-22206356IPR011990Tetratricopeptide-like helical domain
SMARTSM00028470232265IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.723275308IPR019734Tetratricopeptide repeat
PROSITE profilePS502936.768275350IPR013026Tetratricopeptide repeat-containing domain
SMARTSM000280.86275308IPR019734Tetratricopeptide repeat
SMARTSM000280.12317350IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.195317350IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.103.0E-28393581IPR011990Tetratricopeptide-like helical domain
PfamPF134244.6E-10398471No hitNo description
SMARTSM000281.3399432IPR019734Tetratricopeptide repeat
PROSITE profilePS5029317.143399642IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500058.791399432IPR019734Tetratricopeptide repeat
SuperFamilySSF484525.52E-22405645IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500056.726441474IPR019734Tetratricopeptide repeat
SMARTSM000280.33441474IPR019734Tetratricopeptide repeat
SMARTSM000280.24484517IPR019734Tetratricopeptide repeat
PROSITE profilePS500058.909484517IPR019734Tetratricopeptide repeat
PfamPF131810.017487515IPR019734Tetratricopeptide repeat
SMARTSM0002821525558IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.726525558IPR019734Tetratricopeptide repeat
SMARTSM0002889567600IPR019734Tetratricopeptide repeat
PfamPF134246.0E-10568640No hitNo description
Gene3DG3DSA:1.25.40.109.6E-7582642IPR011990Tetratricopeptide-like helical domain
SMARTSM0002865609642IPR019734Tetratricopeptide repeat
PROSITE profilePS500057.139609642IPR019734Tetratricopeptide repeat
SMARTSM007175.6E-4645798IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11765797IPR009057Homeodomain-like
CDDcd001678.43E-6770796No hitNo description
SuperFamilySSF466895.79E-8771802IPR009057Homeodomain-like
PROSITE profilePS500906.574772796IPR017877Myb-like domain
PfamPF002498.5E-7772796IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0031347Biological Processregulation of defense response
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MPGVVVDGVL EGGVVNENEN STPIKDNSVQ NKSPKSPSSP QPTAVETPLN GVVEPSIEQL  60
YDNVCEMQSS DQSPSRASFG SEGEESRIDS ELRHLVGGEM REIEIMEEEE EVEKRRDEFH  120
SDSGSRKGNS STDASLTLNP NVKSPQEKPP VDKRNVKNSR KPNTPKRPRK QNGAEDSSES  180
GLDNPDLGPF LLKQARDLIS SGDNPQKALE LSLRAAKSFE KCAREKPSLD VVMCLHVTAA  240
IHCNLGQYRE AIPVLEHSIE IPVIEEGQDH ALAKFAGHMQ LGDTYAMLGQ LENSIVCYTT  300
GLEVQRQVLG ETDLRVGETC RYLAEAHVQA LQFDEAEKYC QMALDIHKEN GSPASLEEEA  360
DRRLMGLICE TKGDHEAALE HLVLASMAMV ANGQETEVAS VDCSIGDTYL SLTRYDEAVF  420
AYQKALTVFK TSKGENHPAV ASVFVRLADL YNKTGKFRES KSYCENALRI YGKAIPGIPP  480
EEIASGLTDI SAIYESMNEL DQAIKLLQKA LKIYNNAPGQ QSTIAGIEAQ IGVMYYMLGN  540
YSDSYTSFKN AISKLRASGE KKSAFFGIAL NQMGLACVQR YAINEAADLF EEARIILEHE  600
YGPNHPDTLG VYSNLAGTYD AVGRLDDAIE ILEHVVGMRE EKLGTANPDV DDEKKRLAEL  660
LKEAGRDRSR KARSLETLLD ANPHAINKDG IKVVILLFNE DTRTPKRKRF PTCPVLGAVG  720
KKLSFEIADS SEYGRSIHGH PCIKRNHNFR VFQWGVAKGW GGETAAESSM IKWSLIAGRV  780
PGRTDNQVKN HWNSHLRKKL GIKKKKTKVG GISQTDSTKV VENVSVSLDT TLNSLSDNNI  840
GVENLLVTED GSQSTKVGFS EVEEPMTNQC FENPIWISYF DSPSFVEVLD EYSPDFIWHG  900
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ceq_A7e-1239755441198Kinesin light chain 2
3ceq_B7e-1239755441198Kinesin light chain 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111073.10.0protein KINESIN LIGHT CHAIN-RELATED 3-like
RefseqXP_028111074.10.0protein KINESIN LIGHT CHAIN-RELATED 3-like
SwissprotQ9LII80.0KLCR2_ARATH; Protein KINESIN LIGHT CHAIN-RELATED 2
TrEMBLA0A2R6PEL40.0A0A2R6PEL4_ACTCH; Protein KINESIN LIGHT CHAIN-RELATED like
STRINGVIT_17s0000g08260.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-10myb domain protein 5
Publications ? help Back to Top
  1. Bürstenbinder K, et al.
    Arabidopsis calmodulin-binding protein IQ67-domain 1 localizes to microtubules and interacts with kinesin light chain-related protein-1.
    J. Biol. Chem., 2013. 288(3): p. 1871-82
    [PMID:23204523]