PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn201571

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TALE

Protein Properties

Length: 620aa MW: 68350.1 Da PI: 7.513

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn201571	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2e-09	418	455	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Achn201571 418 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 455 664559******************************88 PP
2	BELL	92.9	3.1e-30	296	350	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+qtv++sF+ v+g gsa pYt+lA+ka+S+hFrcLkdai+ q+ Achn201571 296 KVDRRYNHYCEQMQTVVNSFDLVMGFGSAVPYTTLAQKAMSKHFRCLKDAITAQL 350 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-60	219	348	IPR006563	POX domain
Pfam	PF07526	8.5E-39	225	347	IPR006563	POX domain
PROSITE profile	PS50071	12.568	396	459	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	399	463	IPR001356	Homeobox domain
CDD	cd00086	2.59E-12	399	460	No hit	No description
SuperFamily	SSF46689	4.02E-17	400	466	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	402	465	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	416	455	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MPTMKAYSVV QTVRNEDYHQ QLGIFSCPNG FERSQEEHQQ LMSHDSHQIR RDKLIRVQGF 60 QSPPVAAEEE VSGQIPAYET AGMLSEMFNF PPEWYGNRQA TGGLGLLSNS RQQISTINAD 120 SAAAAMQLFH LNPQPRSPSP PGGHIGQFTW VQDSGHEVGT CNSEIGGHVV EGQGLSLSLS 180 SSLLFNQGGS SGNSANYVYK NLGGGSVAQN HQVHIGFGTG VVNGLRNSKY VKAAQELLEE 240 FCSVGRCQFK KNKFGRHNNT NMNPNSSGGG GGDSSSSTKD LPTLTVTDRV EHQRRKVDRR 300 YNHYCEQMQT VVNSFDLVMG FGSAVPYTTL AQKAMSKHFR CLKDAITAQL KHSCELLGDK 360 DAGTSGVTKG ETPRLRLLEQ SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH 420 FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQQESK EESLEREWDQ 480 NTSGHAQTPT PTSTTTTATA KRFQINAQES DPSLVAINTQ CFPENAMSNT IVATATLPTT 540 TATVIQSFPT IHEGDRCHRS SMPGADYGTT ATTSIDGDIG STFTRFGTAR GDVSLTLGLR 600 HAGNPPERRT FSVRDFGDC*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MPTMKAYSVV QTVRNEDYHQ QLGIFSCPNG FERSQEEHQQ LMSHDSHQIR RDKLIRVQGF  60
QSPPVAAEEE VSGQIPAYET AGMLSEMFNF PPEWYGNRQA TGGLGLLSNS RQQISTINAD  120
SAAAAMQLFH LNPQPRSPSP PGGHIGQFTW VQDSGHEVGT CNSEIGGHVV EGQGLSLSLS  180
SSLLFNQGGS SGNSANYVYK NLGGGSVAQN HQVHIGFGTG VVNGLRNSKY VKAAQELLEE  240
FCSVGRCQFK KNKFGRHNNT NMNPNSSGGG GGDSSSSTKD LPTLTVTDRV EHQRRKVDRR  300
YNHYCEQMQT VVNSFDLVMG FGSAVPYTTL AQKAMSKHFR CLKDAITAQL KHSCELLGDK  360
DAGTSGVTKG ETPRLRLLEQ SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH  420
FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQQESK EESLEREWDQ  480
NTSGHAQTPT PTSTTTTATA KRFQINAQES DPSLVAINTQ CFPENAMSNT IVATATLPTT  540
TATVIQSFPT IHEGDRCHRS SMPGADYGTT ATTSIDGDIG STFTRFGTAR GDVSLTLGLR  600
HAGNPPERRT FSVRDFGDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	9e-17	405	462	1	58	Homeobox protein Meis1
4xrs_B	9e-17	405	462	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269670.2	0.0	PREDICTED: BEL1-like homeodomain protein 2
Refseq	XP_019075099.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q94KL5	1e-145	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2R6R5Q7	0.0	A0A2R6R5Q7_ACTCH; BEL1-like homeodomain protein 4
STRING	VIT_04s0023g01020.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-123	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]