PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn201441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 302aa    MW: 32906.6 Da    PI: 7.29
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn201441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18223257135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C + kTp+WR gp g ktLCnaCG+++++ +l
  Achn201441 223 CSHCLVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 257
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-827299IPR016679Transcription factor, GATA, plant
SMARTSM004016.9E-15217271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.187217253IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-13219281No hitNo description
Gene3DG3DSA:3.30.50.108.5E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-12222279No hitNo description
PfamPF003201.1E-15223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDCVEADLKT SFGPPKKVQP RPQAFSDESP EAVNGVSGDE FFVDDLLDFS KEGAEEGFFG  60
IKEDDQDQDP DNTTKSCSVS ISLQEQKQSN KTSFDFGCSE LSVPAEDAAS LEWLSHFVED  120
SFSNYSVPFP AGKSPEKPVE NQSKPLEAKP CFSTPVQTKA RSKRSRTGFR VWSLGSTSES  180
STSSSSTTSS DSILGLPPPP PEAKKQKRRK GETGGGAQQP RRCSHCLVQK TPQWRAGPLG  240
AKTLCNACGV RFKSGRLLPE YRPACSPTFL SDVHSNNHRK VMEMRRKKES EPGSGQPVQS  300
F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061383.11e-104GATA transcription factor 5-like
SwissprotQ9FH577e-65GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2R6R5S80.0A0A2R6R5S8_ACTCH; GATA transcription factor
STRINGXP_009761911.13e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-65GATA transcription factor 5