PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn200831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 387aa    MW: 44097.1 Da    PI: 8.4655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn200831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1616961399
                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                s+ +++p kf ++hg++   +k + l+ +sg +W+v+l   ++ g+++l +GWkeF +   ++ g f+vF+++g+s+f  +v +f++
  Achn200831 16 SATIRIPVKFSSKHGKN--LGKLVFLKVPSGATWTVEL--ANSNGEVWLCNGWKEFSEYYSICFGHFLVFRYEGNSNF--HVLIFDT 96
                56789*********966..8999***************..**********************************9999..****997 PP
2B355.21.3e-172943721899
                 --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +p +fa+++ +g+  ++ ++tl+ ++gr+W+vk+  + +sg+++l+  W++F+++n+Lk+gD++ F+ld   e +l+v++fr+
  Achn200831 294 IPMDFAKKYlNGE--QNSKITLRISEGRTWTVKCYSTTTSGKCTLS--WSSFARDNNLKVGDVCAFELDTGIELSLKVTLFRA 372
                 9********6444..4559***************779999999999..********************987888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.689497IPR003340B3 DNA binding domain
SMARTSM010191.3E-111197IPR003340B3 DNA binding domain
CDDcd100177.60E-161395No hitNo description
Gene3DG3DSA:2.40.330.106.8E-221697IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-121696IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-2117104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-20245371IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-18251371No hitNo description
SMARTSM010191.8E-9288373IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-15292372IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.815294373IPR003340B3 DNA binding domain
PfamPF023624.7E-16294372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSDGLWSAFE FEVSVSATIR IPVKFSSKHG KNLGKLVFLK VPSGATWTVE LANSNGEVWL  60
CNGWKEFSEY YSICFGHFLV FRYEGNSNFH VLIFDTTASE IEYPFHGEQS NMNLNGNLRE  120
PETDVSIEIL DEFPICRMRK TTSNRADNEK DVSVEISEDP PTCRNRRETK LVPDLTSCEM  180
MRTKVTCKLH NNCNLQEFSP DIQSRRIQTR GSKHANPKMD VKSHLKQATK TSTDRIFIAF  240
QRARAFTSEN PVFVVYMRPS YISTNYCLVS YQQNSLGSII AGILRRKIFV LQNIPMDFAK  300
KYLNGEQNSK ITLRISEGRT WTVKCYSTTT SGKCTLSWSS FARDNNLKVG DVCAFELDTG  360
IELSLKVTLF RAGEYQNDDR KDKLVI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6S2D71e-116A0A2R6S2D7_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-35B3 family protein