PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn200581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37748 Da PI: 8.4239 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.2e-12 | 37 | 87 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r +++ ++Wv+e+r p+ k+ r++lg+ ++e+Aa+ ++ a+++l g Achn200581 37 PVYRGIR-RRYGNKWVCEVRKPN---KNSRIWLGTLPSPEMAAQPHDVAALALCG 87 68****9.6679******88873...36**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-8 | 37 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-15 | 38 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.678 | 38 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-24 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 38 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.94E-23 | 39 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNSEDESSTA SSPSSPLPIV LHKRKAGRKK FKVTRHPVYR GIRRRYGNKW VCEVRKPNKN 60 SRIWLGTLPS PEMAAQPHDV AALALCGRNA DLNFPIPPRS FPRTKSASTW DIRLASVHAA 120 RALPFPPLSC SSSTNFSSHE STCDAKAFVP LSRCTLTHTI VPRKSYIEVK PNSFSLNFSQ 180 DPLVQRISSP VLASQDSCIE IPTKSYTQCI ETERHDFFRT ENPCSRNTSI RNAVIQRLPS 240 VKCQKNSVVE PIMVDSSNFE SHKIGIERFS SDSTCVEGSN SVFSDPLVPV FVDEEELFNM 300 PALLDSMAEG LLLTPPAMKT GFNWGDMDDG HHMDLLLW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6P7D3 | 0.0 | A0A2R6P7D3_ACTCH; Dehydration-responsive element-binding protein like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-32 | C-repeat-binding factor 4 |