PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn198951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93989.2 Da    PI: 6.8648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn198951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.7e-21101156156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Achn198951 101 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 156
                 7999************************************************9866 PP
2START226.39.3e-712955164206
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                  + ++el k+a+a+ p+Wv+s+    e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv++++d++ qW e+++    ka+t++vis+g
  Achn198951 295 HQSMEELKKMATAGNPLWVRSVetgrEILNYDEYVREFSVDNSsngrpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWVEMFPcmisKAATVAVISPG 392
                 56899*********************************998889********************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       ga+qlm+aelq+l+p+vp R+++f+Ry+ ql+a++w+ivdvSvd  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++++++ +
  Achn198951 393 egpnknGAVQLMFAELQMLTPMVPtREVYFIRYCNQLSADQWAIVDVSVDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSIIPTM 490
                 ******************************************************98.9***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 181 lrslvksglaegaktwvatlqrqcek 206
                 +r +v+sgla+ga++w atlq+qce+
  Achn198951 491 YRAIVNSGLAFGARHWIATLQQQCER 516
                 ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2387152IPR009057Homeodomain-like
SuperFamilySSF466893.84E-2091156IPR009057Homeodomain-like
PROSITE profilePS5007118.12398158IPR001356Homeobox domain
SMARTSM003891.7E-17100162IPR001356Homeobox domain
PfamPF000461.7E-18101156IPR001356Homeobox domain
CDDcd000862.38E-17105156No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084841.241283519IPR002913START domain
SuperFamilySSF559612.06E-34286516No hitNo description
CDDcd088758.25E-109287515No hitNo description
SMARTSM002341.2E-73292516IPR002913START domain
PfamPF018522.6E-56295516IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-7341515IPR023393START-like domain
SuperFamilySSF517355.35E-9734829IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MGVDMSNPPA SRTKDYFASP ALSLSLAGIF RDGAAAAANM EVEEGDEGSV GGAGRREETV  60
EISSENSGHA RSRSAEEDFD GDGENDGDED GDGDKNKKKK RKKYHRHTAE QIREMEALFK  120
ESPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKFLYR NHILFGFYVT GNGWIWQAIQ  180
ERHENSLLKT EMDKLRDENK SLRETIKKSA CPNCGFATSS RDSSVATEEQ QLRIENARLK  240
SEIEKLRAAV GKYPPGTSPT NSSCSAGNDQ ENRSSLDFYT GIFGLEKTRI MEIVHQSMEE  300
LKKMATAGNP LWVRSVETGR EILNYDEYVR EFSVDNSSNG RPKRSIEASR ETGVVFVDLP  360
RLVQSFMDVN QWVEMFPCMI SKAATVAVIS PGEGPNKNGA VQLMFAELQM LTPMVPTREV  420
YFIRYCNQLS ADQWAIVDVS VDKVEENIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL  480
ECQKSIIPTM YRAIVNSGLA FGARHWIATL QQQCERLVFF MATNVPTKDS SGVATLAGRK  540
SILKLAQRMT WGFCRALGAS SYHTWSKVLS KTGDDIRVAS RKNLNDPGEP LGVIWDIMSN  600
GGPVQSIANL AKGQDRGNAV TIQATKSKES SMWILQDSCT NAYESMVVYA AVDITGMQSV  660
MTGCDASSIA ILPYGFSILP DGLESRPLVI TSQPEEKSTE GGSLLTIAFQ ILTNTSPTAK  720
LTLESVESVN SIISIGSGIA KRVEAFGCPI SYHSRSEKPH TNYKYYSNIV NLVKNSQILN  780
VATLSIRKSL TYWVQSRLGG AGLDVFENEP EVPRELFGLD NVVRWERLGG DLHSYGGPCD  840
PKLGGIFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KKKKRK
296102KKKKRKK
398102KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054896.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2R6PTR70.0A0A2R6PTR7_ACTCH; Homeobox-leucine zipper protein like
STRINGEMJ183590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]