PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn197141
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 293aa    MW: 32725.9 Da    PI: 8.4025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn197141genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l+d++ + G g+W++ ++  g+ R++k+c++rw +yl
       Achn197141 13 KGQWTPEEDEKLLDYISKNGHGSWRSLPKLAGLFRCGKSCRLRWTNYL 60
                     799*******************************************97 PP
2Myb_DNA-binding49.87.9e-1666111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l v+++  lG++ W++Ia+ ++ gRt++++k+ w+++l
       Achn197141  66 RGPFSPEEEKLVVQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 111
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-23663IPR009057Homeodomain-like
PROSITE profilePS5129417.293860IPR017930Myb domain
SuperFamilySSF466894.87E-3010107IPR009057Homeodomain-like
SMARTSM007174.7E-131262IPR001005SANT/Myb domain
PfamPF002491.3E-151360IPR001005SANT/Myb domain
CDDcd001671.08E-101660No hitNo description
PROSITE profilePS5129424.22161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2564115IPR009057Homeodomain-like
SMARTSM007171.6E-1465113IPR001005SANT/Myb domain
PfamPF002491.3E-1466111IPR001005SANT/Myb domain
CDDcd001679.52E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRAPCCEKG LKKGQWTPEE DEKLLDYISK NGHGSWRSLP KLAGLFRCGK SCRLRWTNYL  60
RPDIKRGPFS PEEEKLVVQL HGILGNRWAA IASQLPGRTD NEIKNLWNTH LKKHLICMGI  120
KPQTHKTSST TPNTATPSTR HKEQWQRVRL EAEARLTRES LLINPPSIGR TNSDYFLRIW  180
NSEVGESFRN FHKGDKMLHR NPLSQATLSA KCGSVSGVTT EMGMPLNGLL YSATGSSTRN  240
EDNVMAGSDS SCSNELEDSS NTALLLLLDF QGDNDMSFLE QSDDYAFASC HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27111155108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280626.11e-136transcription factor MYB41
SwissprotQ9M2D91e-109MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2R6QP680.0A0A2R6QP68_ACTCH; Transcription factor like
STRINGEOX960131e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-109myb domain protein 17