PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn196351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YC | ||||||||
Protein Properties | Length: 136aa MW: 15336.5 Da PI: 8.0768 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.3 | 4e-14 | 9 | 97 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 ++t+ + ++P r+kki+k d+d++++ +ea l+s ++f+ l+ +s a e+kr+t+k + av+r + + dfl++ p+ Achn196351 9 TNNTEAIQPNFPSGRVKKIMKLDKDINKVNSEALFLVSCCTDIFLEFLAEKSARVAIEKKRKTVKLEHLRIAVKRHQpTSDFLLESLPE 97 3445556899****************************9999999999*************************99764889**998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-17 | 15 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-19 | 18 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.9E-19 | 19 | 96 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAEEEEEETN NTEAIQPNFP SGRVKKIMKL DKDINKVNSE ALFLVSCCTD IFLEFLAEKS 60 ARVAIEKKRK TVKLEHLRIA VKRHQPTSDF LLESLPEPPR PTAGDSLAER TRNRKADKPV 120 PAGTCRIDDF FHKSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093396.1 | 4e-58 | DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A2R6P3A7 | 2e-93 | A0A2R6P3A7_ACTCH; Dr1-associated corepressor like | ||||
STRING | XP_010044803.1 | 1e-53 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11435 | 24 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-48 | nuclear factor Y, subunit C13 |