PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn196331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SBP | ||||||||
Protein Properties | Length: 445aa MW: 48574 Da PI: 9.5087 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.9e-41 | 175 | 252 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akeyhr+h+vCe hsk+p+v+v g+e+rfCqqCsrfh lsefDe+krsCr+rL++hn+rrrk+q+ Achn196331 175 RCQVEGCNLDLSSAKEYHRKHRVCESHSKCPKVVVGGVERRFCQQCSRFHGLSEFDEKKRSCRKRLSDHNARRRKPQQ 252 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.3E-33 | 169 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.855 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.36E-39 | 174 | 255 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-31 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MDWNAKWDWE NLVLFNSKTI DSPKKQPTDW GIEEEGEIDP GSFNLYWGGG GGSGSELAHG 60 SSTRSTISAS TDSSPKEVIK TSKIVSEACH PFPGDFSKKN ELAIAELSGT SLPLESSVGA 120 GEPLIGLKLG KRTYFENSCT GGSAKPSSFS MMPVASSAST AKKIKSSCQS TPPPRCQVEG 180 CNLDLSSAKE YHRKHRVCES HSKCPKVVVG GVERRFCQQC SRFHGLSEFD EKKRSCRKRL 240 SDHNARRRKP QQDAIQFNST KLSAPFFGGR QQMSFVLNNT PLGHTSSSAS TPWECTSSPK 300 FTLTKGYLLK GENTGGINGQ LQFSGTELSH TIGMPGQNSN RLLPSKGTKP EVFTQGLSYF 360 LNRSLLMTSL SFRVSFKLKL FNVMLPEDLI FPQGFGYDDP NITMMINNDG TLLSARTSKI 420 FLLGKTYKQV WTGMSGGMLQ VPGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 176 | 249 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 248 | KKRSCRKRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093786.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028093787.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028093788.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028093795.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_028093800.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2R6P3A4 | 0.0 | A0A2R6P3A4_ACTCH; Squamosa promoter-binding-like protein | ||||
STRING | VIT_01s0010g03710.t01 | 1e-127 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 4e-61 | squamosa promoter binding protein-like 2 |