PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn195891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 22895.8 Da PI: 9.0905 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 1.9e-09 | 2 | 39 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l+++++ +G g+W++++++ g+ R + +c++rw +yl Achn195891 2 ILKNYIEAHGEGNWASVSQKSGLMRGGRSCRLRWKNYL 39 6999********************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Achn195891 45 RGRMSDDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 90 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.827 | 1 | 39 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-7 | 2 | 39 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.03E-22 | 2 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-15 | 2 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-5 | 2 | 39 | No hit | No description |
PROSITE profile | PS51294 | 24.314 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-16 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 45 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 47 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-11 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MILKNYIEAH GEGNWASVSQ KSGLMRGGRS CRLRWKNYLR PNIKRGRMSD DEKDLIIRLH 60 KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKKNSQHKTT TLGPKNKKKP QQLPTTQPIC 120 SRNSENDNQE SHGRKDEDIT IKSPQMEDTE SFNFDIEEPS LLLSHNSLFF YEDEPFMPIL 180 DSFLFSEAFR SIGEETT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-18 | 7 | 93 | 22 | 107 | B-MYB |
1h8a_C | 2e-18 | 6 | 93 | 41 | 127 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028098261.1 | 1e-100 | transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 4e-58 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A2R6R4I9 | 1e-144 | A0A2R6R4I9_ACTCH; Transcription factor like | ||||
STRING | XP_010112475.1 | 2e-75 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-60 | myb domain protein 82 |