PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn195651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 532aa MW: 58562.5 Da PI: 5.1085 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.1 | 1.6e-127 | 149 | 512 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lv++L++cAe+v+ g+++la +l+ ++++l + + g + ++a yf AL++rl+ ++ ++ l s + e+ ++ f+e+sP+lkf+h+t Achn195651 149 LVHVLMTCAECVQGGEFSLACSLIDEMQDLltRVNVGCGIGKVACYFIDALSRRLFT--PQGAA-LVGS------TNENEILYHHFYEASPYLKFAHFT 238 689**************************987788899******************9..33332.2222......2344567789************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+ +++l+etg rLa++A++++v+f+f+ +va+ led+++ +L+v Achn195651 239 ANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPVLRLTGIGPPSSDGRDSLRETGVRLAELARSVNVRFDFRGIVASLLEDVKPLMLQV 337 *************************************************************************************************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +p+Ea+a+n+++qlhrll ++ +s+++++L+ +++l+Pk+++vveqeadhn+++Fl+rf+eal+yys++fdsle+ ++ ++ ++++rei+ Achn195651 338 DPKEAVAINSIMQLHRLLVSDPIRTSPINNFLDWIRDLNPKIMTVVEQEADHNQPEFLARFTEALNYYSTVFDSLETC---SAQLEKAFADMYVQREIC 433 ******************99999999***************************************************9...567888889999****** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nvv+ceg+ r+erhe l+kWr+rl+ aGFkp++l+++a kqak+ll ++ +gy vee++g+l+lgW++rpL+++SaW+ Achn195651 434 NVVCCEGSVRVERHEPLAKWRARLNGAGFKPLHLGSNAFKQAKMLLTLFSAEGYCVEENEGCLTLGWHSRPLIAASAWQ 512 ******************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 2.0E-24 | 31 | 97 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 2.2E-16 | 31 | 103 | No hit | No description |
PROSITE profile | PS50985 | 62.287 | 123 | 492 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-125 | 149 | 512 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MDPYDSSTSG SGISSSSSSS SCAGKSPEQM DCLLAGAGYR VPSSELRHVA QHLERFEKVM 60 VNAPSQISHL GNDVVHHNPL DLGTWVDSLL SDLNPPEYSD LRYNDFGPIL DPSAITSAWT 120 EHLTPEQQRI LPQHLTVATA MEEDSSIRLV HVLMTCAECV QGGEFSLACS LIDEMQDLLT 180 RVNVGCGIGK VACYFIDALS RRLFTPQGAA LVGSTNENEI LYHHFYEASP YLKFAHFTAN 240 QAILEAFDGH DCVHVIDFNL MHGLQWPALI QALALRPGGP PVLRLTGIGP PSSDGRDSLR 300 ETGVRLAELA RSVNVRFDFR GIVASLLEDV KPLMLQVDPK EAVAINSIMQ LHRLLVSDPI 360 RTSPINNFLD WIRDLNPKIM TVVEQEADHN QPEFLARFTE ALNYYSTVFD SLETCSAQLE 420 KAFADMYVQR EICNVVCCEG SVRVERHEPL AKWRARLNGA GFKPLHLGSN AFKQAKMLLT 480 LFSAEGYCVE ENEGCLTLGW HSRPLIAASA WQAVSEPNPS LGLLGHQNNV L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 156 | 511 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-58 | 156 | 511 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-58 | 156 | 511 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028078849.1 | 0.0 | DELLA protein SLN1-like | ||||
Swissprot | Q8S4W7 | 1e-153 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A2R6R4I7 | 0.0 | A0A2R6R4I7_ACTCH; DELLA protein | ||||
STRING | XP_010254273.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15141 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-155 | GRAS family protein |