PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn195651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 532aa    MW: 58562.5 Da    PI: 5.1085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn195651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.11.6e-1271495121374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv++L++cAe+v+ g+++la +l+ ++++l  + + g  + ++a yf  AL++rl+   ++ ++ l  s      + e+   ++ f+e+sP+lkf+h+t
  Achn195651 149 LVHVLMTCAECVQGGEFSLACSLIDEMQDLltRVNVGCGIGKVACYFIDALSRRLFT--PQGAA-LVGS------TNENEILYHHFYEASPYLKFAHFT 238
                 689**************************987788899******************9..33332.2222......2344567789************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+ +++l+etg rLa++A++++v+f+f+ +va+ led+++ +L+v
  Achn195651 239 ANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPVLRLTGIGPPSSDGRDSLRETGVRLAELARSVNVRFDFRGIVASLLEDVKPLMLQV 337
                 *************************************************************************************************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+Ea+a+n+++qlhrll ++   +s+++++L+ +++l+Pk+++vveqeadhn+++Fl+rf+eal+yys++fdsle+     ++ ++    ++++rei+
  Achn195651 338 DPKEAVAINSIMQLHRLLVSDPIRTSPINNFLDWIRDLNPKIMTVVEQEADHNQPEFLARFTEALNYYSTVFDSLETC---SAQLEKAFADMYVQREIC 433
                 ******************99999999***************************************************9...567888889999****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvv+ceg+ r+erhe l+kWr+rl+ aGFkp++l+++a kqak+ll  ++ +gy vee++g+l+lgW++rpL+++SaW+
  Achn195651 434 NVVCCEGSVRVERHEPLAKWRARLNGAGFKPLHLGSNAFKQAKMLLTLFSAEGYCVEENEGCLTLGWHSRPLIAASAWQ 512
                 ******************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.0E-243197IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.2E-1631103No hitNo description
PROSITE profilePS5098562.287123492IPR005202Transcription factor GRAS
PfamPF035145.4E-125149512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDPYDSSTSG SGISSSSSSS SCAGKSPEQM DCLLAGAGYR VPSSELRHVA QHLERFEKVM  60
VNAPSQISHL GNDVVHHNPL DLGTWVDSLL SDLNPPEYSD LRYNDFGPIL DPSAITSAWT  120
EHLTPEQQRI LPQHLTVATA MEEDSSIRLV HVLMTCAECV QGGEFSLACS LIDEMQDLLT  180
RVNVGCGIGK VACYFIDALS RRLFTPQGAA LVGSTNENEI LYHHFYEASP YLKFAHFTAN  240
QAILEAFDGH DCVHVIDFNL MHGLQWPALI QALALRPGGP PVLRLTGIGP PSSDGRDSLR  300
ETGVRLAELA RSVNVRFDFR GIVASLLEDV KPLMLQVDPK EAVAINSIMQ LHRLLVSDPI  360
RTSPINNFLD WIRDLNPKIM TVVEQEADHN QPEFLARFTE ALNYYSTVFD SLETCSAQLE  420
KAFADMYVQR EICNVVCCEG SVRVERHEPL AKWRARLNGA GFKPLHLGSN AFKQAKMLLT  480
LFSAEGYCVE ENEGCLTLGW HSRPLIAASA WQAVSEPNPS LGLLGHQNNV L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5815651126378Protein SCARECROW
5b3h_A1e-5815651125377Protein SCARECROW
5b3h_D1e-5815651125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078849.10.0DELLA protein SLN1-like
SwissprotQ8S4W71e-153GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2R6R4I70.0A0A2R6R4I7_ACTCH; DELLA protein
STRINGXP_010254273.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1514158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-155GRAS family protein