PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn195411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 296aa    MW: 33863.1 Da    PI: 6.3785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn195411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+ +vk+lG ++W+ Ia+  g++R++k+c++rw +yl
       Achn195411  8 KGPWTEHEDVQLLLYVKLLGDRRWDFIAKVSGLKRSGKSCRLRWVNYL 55
                     79********************************************97 PP

2Myb_DNA-binding46.77.1e-1562106248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T+ E+ l +++  ++G++ W++Ia +++ gRt++++k++w++++
       Achn195411  62 GKMTPHEERLVIELQSKWGNR-WSRIALKLP-GRTDNEIKNYWRTHM 106
                      899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.877355IPR017930Myb domain
SuperFamilySSF466893.71E-276102IPR009057Homeodomain-like
SMARTSM007172.2E-14757IPR001005SANT/Myb domain
PfamPF002493.8E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-19962IPR009057Homeodomain-like
CDDcd001676.93E-101055No hitNo description
PROSITE profilePS5129425.06456110IPR017930Myb domain
SMARTSM007177.5E-1560108IPR001005SANT/Myb domain
PfamPF002495.0E-1362105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2263109IPR009057Homeodomain-like
CDDcd001672.67E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAQEEKRKGP WTEHEDVQLL LYVKLLGDRR WDFIAKVSGL KRSGKSCRLR WVNYLHPGLK  60
HGKMTPHEER LVIELQSKWG NRWSRIALKL PGRTDNEIKN YWRTHMRKKA QERKKSAMSP  120
TSSNSNISSS SESNNPQGDS MPIVETKERS FYGTGRILAQ ASPISKSSSL SSSNPPVDSM  180
PIVETEERSF YDPGGLEMIV PCGKKDQEEG ESEKGYSMDE IWKNIDYFES DTTIGYREDG  240
CNLSFQTMAS PIWNYCPDLL WMTEEDEESK MSIPDTPDNC FAYYDQIKSS KLFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2381104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096805.11e-117transcription factor MYB59-like isoform X1
TrEMBLA0A2R6QTD40.0A0A2R6QTD4_ACTCH; Transcription factor like
STRINGVIT_06s0004g04140.t011e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-65myb domain protein 59