PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn195411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33863.1 Da PI: 6.3785 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.5e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+ +vk+lG ++W+ Ia+ g++R++k+c++rw +yl Achn195411 8 KGPWTEHEDVQLLLYVKLLGDRRWDFIAKVSGLKRSGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.1e-15 | 62 | 106 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+ E+ l +++ ++G++ W++Ia +++ gRt++++k++w++++ Achn195411 62 GKMTPHEERLVIELQSKWGNR-WSRIALKLP-GRTDNEIKNYWRTHM 106 899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.877 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.93E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.064 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-13 | 62 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.67E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAQEEKRKGP WTEHEDVQLL LYVKLLGDRR WDFIAKVSGL KRSGKSCRLR WVNYLHPGLK 60 HGKMTPHEER LVIELQSKWG NRWSRIALKL PGRTDNEIKN YWRTHMRKKA QERKKSAMSP 120 TSSNSNISSS SESNNPQGDS MPIVETKERS FYGTGRILAQ ASPISKSSSL SSSNPPVDSM 180 PIVETEERSF YDPGGLEMIV PCGKKDQEEG ESEKGYSMDE IWKNIDYFES DTTIGYREDG 240 CNLSFQTMAS PIWNYCPDLL WMTEEDEESK MSIPDTPDNC FAYYDQIKSS KLFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-23 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028096805.1 | 1e-117 | transcription factor MYB59-like isoform X1 | ||||
TrEMBL | A0A2R6QTD4 | 0.0 | A0A2R6QTD4_ACTCH; Transcription factor like | ||||
STRING | VIT_06s0004g04140.t01 | 1e-96 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-65 | myb domain protein 59 |