PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn195261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 589aa    MW: 64456 Da    PI: 7.3671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn195261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007279101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F +   L  H+r+H
  Achn195261  79 HECSICGLEFATGQALGGHMRRH 101
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.58E-834101No hitNo description
PfamPF139122.8E-113560IPR007087Zinc finger, C2H2
SMARTSM003550.453658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5563663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139124.3E-1078102IPR007087Zinc finger, C2H2
SMARTSM003550.02779101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.24579101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MKRMREEGAV EALAMANCLM LLSKVGKSTT FRDRVFACKT CNREFPTFQA LGGHRASHKK  60
PRLATVGESD GSLAKLKTHE CSICGLEFAT GQALGGHMRR HKVATASRGF EISKSSGGEL  120
AAESFHNKGF WLAEGVGHLT HGDTPYDNPS RSEPKRPHQW FADTEQELSP NKKQAVQAPN  180
SKSPTGTLNA NAPPWGNTSG AFPSVPSQFM DQLIGDDTNR PFSFTKQNIS PVGLDDSNLR  240
QKGVNEQYGN DSSVGWSISQ TMEDPEICLG YGGSRKVKVN QVKDSVSGLH APKQHNSNVG  300
QAYIPGNETG LVPMGKGYSK EDGSVMLMGH TYKGNVNIGS MGSASGKGDE DSITIGHSYS  360
KGEFNTMFDG FQEEPDIDPL VRPLNSYQLI YDQSSVQTSE IPNNELDASI ANAIETVSKV  420
AKPRRESASK NKSELKGARK EREAPNSFPW NVKTLISTGI LDGVPVKYVS LSGEVLHAHG  480
FERHAGCKTK HPNDHIYFEN GKSTYQVVQE LRSTPENELF DAIQTVTGSP INQKAFTTWK  540
VGPSDDRLGS PGWHPWYAHC WELHGTVRCL CHLSHVWSFN SITMWLEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068224.11e-178uncharacterized protein LOC114270822
RefseqXP_028068225.11e-178uncharacterized protein LOC114270822
RefseqXP_028068227.11e-178uncharacterized protein LOC114270822
TrEMBLA0A2R6QTA70.0A0A2R6QTA7_ACTCH; RNA-binding protein like (Fragment)
STRINGEOY341341e-153(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-30C2H2 family protein