PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn195011

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 1024aa MW: 113840 Da PI: 6.201

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn195011	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2e-41	156	233	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv+++ qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Achn195011 156 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVANVLQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 233 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.3E-33	151	218	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.325	154	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	155	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.9E-30	157	230	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	7.5E-6	308	327	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.5E-6	651	652	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.5E-7	789	905	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.5E-6	794	903	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.51E-6	794	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence Send to blast
METRVGGEAR LFYGMGMGSV DLRAVGKRSL EWDPNDWRWD GDLFIANPLN SNQSNYQSRQ 60 FLPIGEAGIP ITGGSSNSSS SCSDEVNLGT DKGKRELEKR RRVVVVEDDN LEDERSNLTL 120 KLGGHGHQIN QREVRNWDGT GGKKTKLLGT SSNRAVCQVE DCGADLSNAK DYHRRHKVCE 180 MHSKASRALV ANVLQRFCQQ CSRFHALQEF DEGKRSCRRR LAGHNKRRRK TQPDAVANSS 240 SLNDDQASGY LLISLLRILT NMHSNKSDET NDQDLLSHLL RSLASHGGLQ GDKNIYGLLQ 300 ESQNLLNSGS STGNSEMVSA LLSNSPQGLS KPIQHNLPVT TSEASQRGLC LENARTQVMQ 360 TTTSQNPSTI LSIKDNASPY SEARDISGGS RLNNFDLNDA YVDSDDCINL ERSPVPLGLG 420 TVSLECPSWV QQNSHQSSPP QTSRNSDSAS TQSPSSSSGE TQSRTDRIVL KLFGKEPSDF 480 PFVLRAQILD WLSHSPTDIE SYIRPGCVVL TIYLRLYDSA WEELRCDLTS SLSRLLDASD 540 DDTFWTTGWL YTRMQHQIAF MYNGQVVAET SLPLKNDTYS TIQSIKPIAV STSEGAQFLV 600 KGFNLKRPST RLLCALEGNY LVEEATEELL EGLDSPEGHD ELHFRNFSCS IPAVTGRGFI 660 EVEDNGLSSS FFPFIVAEKD VCSEIRTLER LIELPETDDI QGGNAKIEAR NRALDFVHEM 720 GWLLHRNHLK SRLGPLDPNS GLFPLRRFKW LMEFSVDHDW CAVVKKLLNI LLDGTVGAGE 780 QPFLKPALSE MGLLHRAVRR NSRSLVECLL KYVPENVSDE LRTEFSSLVG GDENFLFRPD 840 VVGPAGLTPL HVAAGRDGCE DVLDALTDDP GKVGVEAWKS ARDSTGFTPE DYARLRGHYS 900 YIHLVQKKIN RLAVTGHVVV DIPAYVPDCN INQKQHEQQQ QQQPASFQIG NSETRPIQRP 960 CRLCDQKLAY GNANSYLLYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF RPFRWELLDY 1020 GSS*

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence Send to blast

METRVGGEAR LFYGMGMGSV DLRAVGKRSL EWDPNDWRWD GDLFIANPLN SNQSNYQSRQ  60
FLPIGEAGIP ITGGSSNSSS SCSDEVNLGT DKGKRELEKR RRVVVVEDDN LEDERSNLTL  120
KLGGHGHQIN QREVRNWDGT GGKKTKLLGT SSNRAVCQVE DCGADLSNAK DYHRRHKVCE  180
MHSKASRALV ANVLQRFCQQ CSRFHALQEF DEGKRSCRRR LAGHNKRRRK TQPDAVANSS  240
SLNDDQASGY LLISLLRILT NMHSNKSDET NDQDLLSHLL RSLASHGGLQ GDKNIYGLLQ  300
ESQNLLNSGS STGNSEMVSA LLSNSPQGLS KPIQHNLPVT TSEASQRGLC LENARTQVMQ  360
TTTSQNPSTI LSIKDNASPY SEARDISGGS RLNNFDLNDA YVDSDDCINL ERSPVPLGLG  420
TVSLECPSWV QQNSHQSSPP QTSRNSDSAS TQSPSSSSGE TQSRTDRIVL KLFGKEPSDF  480
PFVLRAQILD WLSHSPTDIE SYIRPGCVVL TIYLRLYDSA WEELRCDLTS SLSRLLDASD  540
DDTFWTTGWL YTRMQHQIAF MYNGQVVAET SLPLKNDTYS TIQSIKPIAV STSEGAQFLV  600
KGFNLKRPST RLLCALEGNY LVEEATEELL EGLDSPEGHD ELHFRNFSCS IPAVTGRGFI  660
EVEDNGLSSS FFPFIVAEKD VCSEIRTLER LIELPETDDI QGGNAKIEAR NRALDFVHEM  720
GWLLHRNHLK SRLGPLDPNS GLFPLRRFKW LMEFSVDHDW CAVVKKLLNI LLDGTVGAGE  780
QPFLKPALSE MGLLHRAVRR NSRSLVECLL KYVPENVSDE LRTEFSSLVG GDENFLFRPD  840
VVGPAGLTPL HVAAGRDGCE DVLDALTDDP GKVGVEAWKS ARDSTGFTPE DYARLRGHYS  900
YIHLVQKKIN RLAVTGHVVV DIPAYVPDCN INQKQHEQQQ QQQPASFQIG NSETRPIQRP  960
CRLCDQKLAY GNANSYLLYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF RPFRWELLDY  1020
GSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	151	230	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028054458.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2R6PCT3	0.0	A0A2R6PCT3_ACTCH; Squamosa promoter-binding-like protein
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]