PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn191261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Protein Properties

Length: 675aa MW: 74493.8 Da PI: 8.6103

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn191261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.5	1.1e-17	233	344	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae + +++ e++ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++ Achn191261 233 FEKVLSASDAGRIGRLVLPKACAELYiyvkcklmqayfpPISQSEGVPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSR 330 99*******************999*99999999666678999***********99899999999.*******************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ +++lv++++++ Achn191261 331 ID-PGGKLVMGFRKA 344 87.788888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-26	229	350	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.19E-18	230	344	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.87E-22	231	343	No hit	No description
SMART	SM01019	5.3E-17	233	345	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.32	233	345	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.6E-15	233	343	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MHKLCKEFGD SSGKTYSANK NSDPQSSFVE NRMSGISSDK QKLMKLSKAM DAKELNHFPQ 60 PWKSESNACN GKIKREEIML STGEVGTGFP GLIQLVGPSI SAKSENSRQK FGLTDMCELL 120 AQPSLSFSLS TPLDTPNSLV PPPGDVVEGR KQNKIPPFQQ GQRTRHILPK PSKIGLTIGS 180 EENNISVSQT RVARPPAEGR GRTQLLPRYW PRITDQELQQ ISGDLNSTIV PLFEKVLSAS 240 DAGRIGRLVL PKACAELYIY VKCKLMQAYF PPISQSEGVP IRIQDIKGKE WTFQFRFWPN 300 NNSRMYVLEG VTPCIQNMQL QAGDTVIFSR IDPGGKLVMG FRKASNSVDM QDSQTSSLAN 360 GVSSGETSTS GVNDNLPTKH GGRTNEDLSQ RPMLVPEKKR SRNIGSKCKR LLMHSEDAMA 420 LRLTWAEAQE LLRPPPSVKP TVVMVEDREF EEYEAKSKKR RITERRNVPQ ESEPSGLDAL 480 ATAAVLGADA GDPDDPSAGP TTKHPRHRPG CTCIVCIQPP SGKGRHKSTC ICNVCLTVKR 540 RFKTRKKKRE REAEIARGKD LGPTKDEPEV HVNPLKEEDK IKNTIPKDVA ETGKGQLDLN 600 CDPNREDDVL GLMSLVHAAN LPLEMYLMQN GIADLGTCLL SQTVGEIESL RPNEGCVSSS 660 IVERENHENH GDER*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MHKLCKEFGD SSGKTYSANK NSDPQSSFVE NRMSGISSDK QKLMKLSKAM DAKELNHFPQ  60
PWKSESNACN GKIKREEIML STGEVGTGFP GLIQLVGPSI SAKSENSRQK FGLTDMCELL  120
AQPSLSFSLS TPLDTPNSLV PPPGDVVEGR KQNKIPPFQQ GQRTRHILPK PSKIGLTIGS  180
EENNISVSQT RVARPPAEGR GRTQLLPRYW PRITDQELQQ ISGDLNSTIV PLFEKVLSAS  240
DAGRIGRLVL PKACAELYIY VKCKLMQAYF PPISQSEGVP IRIQDIKGKE WTFQFRFWPN  300
NNSRMYVLEG VTPCIQNMQL QAGDTVIFSR IDPGGKLVMG FRKASNSVDM QDSQTSSLAN  360
GVSSGETSTS GVNDNLPTKH GGRTNEDLSQ RPMLVPEKKR SRNIGSKCKR LLMHSEDAMA  420
LRLTWAEAQE LLRPPPSVKP TVVMVEDREF EEYEAKSKKR RITERRNVPQ ESEPSGLDAL  480
ATAAVLGADA GDPDDPSAGP TTKHPRHRPG CTCIVCIQPP SGKGRHKSTC ICNVCLTVKR  540
RFKTRKKKRE REAEIARGKD LGPTKDEPEV HVNPLKEEDK IKNTIPKDVA ETGKGQLDLN  600
CDPNREDDVL GLMSLVHAAN LPLEMYLMQN GIADLGTCLL SQTVGEIESL RPNEGCVSSS  660
IVERENHENH GDER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-71	211	351	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	538	548	KRRFKTRKKKR
2	539	549	RRFKTRKKKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019248237.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1-like
Swissprot	Q6Z3U3	1e-111	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2R6PPL3	0.0	A0A2R6PPL3_ACTCH; B3 domain-containing protein
STRING	XP_009772834.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-111	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]