PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn191231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 318aa    MW: 36354.9 Da    PI: 8.8058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn191231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20171220255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+  l+g
  Achn191231 171 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTYDTPEEAATVYDKAAVLLRG 220
                 89*******.**********84....34**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.110.101.9E-31166IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF544951.21E-25166IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd001951.00E-29480No hitNo description
SMARTSM002129.7E-94151No hitNo description
PROSITE profilePS5012721.678466IPR000608Ubiquitin-conjugating enzyme E2
PfamPF001792.5E-18567IPR000608Ubiquitin-conjugating enzyme E2
PfamPF008479.3E-13171215IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22171228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-30171229IPR001471AP2/ERF domain
PROSITE profilePS5103224.605171228IPR001471AP2/ERF domain
SMARTSM003802.7E-37171234IPR001471AP2/ERF domain
CDDcd000184.06E-31171228No hitNo description
PRINTSPR003671.5E-9172183IPR001471AP2/ERF domain
PRINTSPR003671.5E-9194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP NESPYAGGVF LVSIHFPPDY  60
PFKPPKQFYD FLFTWKMSTP PSKIISDRRS KAPGESPTTF RRKVVRIILT DADATDSSGD  120
DDGKVVRREK RHVKEIKFKQ SPKSVPKPNQ TKKRSDRRFR SPEYDVTRWN KFRGVRRRPW  180
GRWAAEIRDP TRRKRVWLGT YDTPEEAATV YDKAAVLLRG RDAVTNFPKV DVTETVFDVK  240
TDGKSFHTEE ASSPTSVLRY EELTPFDDLS YGAVDAFGFH IDSPLNLPEF SSLENYYGED  300
DLGEFDLDVA DFLVDSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x57_A1e-381663297Ubiquitin-conjugating enzyme E2 8
4x57_C1e-381663297Ubiquitin-conjugating enzyme E2 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175194RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4005961e-51JN400596.1 Camellia sinensis ubiquitin-conjugating enzyme E2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077380.11e-94pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-60PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2R6PQE61e-171A0A2R6PQE6_ACTCH; Pathogenesis-related transcriptional activator like
STRINGXP_009607079.12e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-29cytokinin response factor 4