PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn188871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 388aa    MW: 43152 Da    PI: 5.362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn188871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19172221255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa  +++a+ +l+g
  Achn188871 172 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFDTAEEAAMVYDHAAIQLRG 221
                 89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-30171229IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21172229IPR016177DNA-binding domain
PROSITE profilePS5103223.657172229IPR001471AP2/ERF domain
CDDcd000188.86E-32172229No hitNo description
PfamPF008471.1E-11172221IPR001471AP2/ERF domain
SMARTSM003805.4E-37172235IPR001471AP2/ERF domain
PRINTSPR003672.1E-10173184IPR001471AP2/ERF domain
PRINTSPR003672.1E-10195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNKQNEIRKG HPTPHDQLQV SVNGAKKHAE LSADPSIYFP RVKSLLFTAT ITLPVFRFRC  60
ESERYGSKYA VSSEIQKKVP EMSSGGPRVV RITVTDADAT DSSSDDEDGV FRRFRVKKFV  120
NEVAIESGCS RKNEEIAGYR SKKAAKARNR RKRSAGKLQI PADKFKLNSG RKFRGVRQRP  180
WGKWAAEIRD PLRRVRLWLG TFDTAEEAAM VYDHAAIQLR GPDALTNFAS PQKTAQIFPE  240
KTRLTCSGCN SVEESHNDNL PSPTSVLRFD SAPETESSPS QPPNYAVACF PDFKDDVSVS  300
ENFSDFSPVD TIFPDGIFDF EDPVPDLSDL FDGPGLQENF SDEDYGNLFL GSGDVFGYGQ  360
TTWPTDDYLQ FQDIGDIFGS DPLVGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19170228362ATERF1
3gcc_A1e-19170228362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106981.11e-117ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6QN650.0A0A2R6QN65_ACTCH; Ethylene-responsive transcription factor
STRINGXP_009763317.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-51cytokinin response factor 2