PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn188081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 612aa    MW: 66901.4 Da    PI: 6.6085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn188081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.72.6e-1112456113374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L+e+A+a+s+g++e a+++L+rl++  + +g++ qRl+ay++ AL++r+      + +  p+ e      +e++ ++++f+evsP++k+++++aN a
  Achn188081 245 QSLIEAATAISEGKTEVASEILTRLNQVGNIRGTAEQRLTAYMVSALRSRVKP----TEHPPPVAEL---YGEEHAISTQMFYEVSPCFKLGFMAANLA 336
                 78**************************************************9....4433344444...4999999********************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea++ +   ++H++Dfdi+ G+Q++ L++aLa+R+ +++psl+iT++ +  +  +e+l+ +g+ L+  A+++g+ f+fnv ++ +++dl+le+L v+
  Achn188081 337 ILEATSDQrpCKLHVVDFDIGRGGQYMHLIHALAARKgDNSPSLKITTFTD-FAYGEEKLKLVGDELKTRANKVGIIFNFNV-LSLKITDLSLERLGVE 433
                 *******977789************************7889**********.445899************************.5999************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+laVn++++l++l+desv++e+ rde+L++v++lsP vv+vveqe++ n+++F++r++ea+ yy a+fdsl+a+++r++ +r+ +E+  l+r++ n
  Achn188081 434 ENEVLAVNFAFRLYKLPDESVTTENLRDELLRQVRRLSPAVVTVVEQEMSANTAPFMARVTEACGYYGAVFDSLDATVSRDNPDRVRIEEG-LSRKAAN 531
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+r+++aGF+p pls  + ++ ++ll+     + g++v+ e g +++gW++r+L+++SaWr
  Achn188081 532 SVACEGRDRVERCEVFGKWRARMGMAGFNPKPLSPLVSDSLRTLLNSGTcgNPGFTVKAETGGVCFGWMGRTLTVASAWR 611
                 *********************************************86444499**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.365217589IPR005202Transcription factor GRAS
PfamPF035149.0E-109245611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSSGFSGDFF TAGGFTGRSM AINNPQNIYN LADPASQIHP RRPDLIGKRS LAEFQTQHQL  60
LQQQQALGLY LRNVKPRTYQ NPSPISPISS DFSASLSPDV SSISSTSSVS SSPAISTRNG  120
LPIMQPQQIR PQPINFGNGN SVIPFNHPNF SGVSYPNLLP NRGVNRETGE ESEKKMMNRL  180
HELEKQLLDD NEDDEGDAVS VVTNSEWSET IQNLIGSTQK PISPTSSSSS CSSSSAYPQS  240
LSPKQSLIEA ATAISEGKTE VASEILTRLN QVGNIRGTAE QRLTAYMVSA LRSRVKPTEH  300
PPPVAELYGE EHAISTQMFY EVSPCFKLGF MAANLAILEA TSDQRPCKLH VVDFDIGRGG  360
QYMHLIHALA ARKGDNSPSL KITTFTDFAY GEEKLKLVGD ELKTRANKVG IIFNFNVLSL  420
KITDLSLERL GVEENEVLAV NFAFRLYKLP DESVTTENLR DELLRQVRRL SPAVVTVVEQ  480
EMSANTAPFM ARVTEACGYY GAVFDSLDAT VSRDNPDRVR IEEGLSRKAA NSVACEGRDR  540
VERCEVFGKW RARMGMAGFN PKPLSPLVSD SLRTLLNSGT CGNPGFTVKA ETGGVCFGWM  600
GRTLTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-412456116375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124665.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-156SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2R6RSN90.0A0A2R6RSN9_ACTCH; Scarecrow-like protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-145SCARECROW-like 8