PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn186551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 531aa    MW: 58604.1 Da    PI: 7.7573
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn186551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.17.3e-24374438170
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                 r+++sL+llt+kf++l++++++g+++ln++++      v  ++RRiYDi+NVLe+++ iek++k++irw+
  Achn186551 374 RYDSSLGLLTKKFISLIQEAKNGTLDLNKATNVF---AV--QKRRIYDITNVLEGIGFIEKTAKSHIRWN 438
                 6899******************************...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF041899.8E-4323275IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Gene3DG3DSA:1.10.10.103.5E-25371438IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.4E-31374439IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-16374437IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-22376438IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030488Biological ProcesstRNA methylation
GO:0005667Cellular Componenttranscription factor complex
GO:0031515Cellular ComponenttRNA (m1A) methyltransferase complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MSQNKNLEED ANQNPRVTWE GCSVLLDVND GDRLVFARLT PASSLAIGNK KCALQPLIGC  60
PFGSLFQVEN GKEGPYLSRV LPTTTEVSGD NVQEKVYCQI KDESKDNRAL VDNNTAQSLT  120
GEDIDSMRRK SLANEWLSYR QGVTGDEIVQ ALIANSATFE KKTSFSQEKY RLKKQKKYAP  180
KVLLRRPFTR RYLRVDTLSL LLSMGNVSPH SDILVVDMVG GILTGAVAER LGGTGFVCNT  240
YLGVTPYPID IVRMFNFSSE TCRRFSMIVF AISLFDAFSM RIHPIVFQRP HPSALAPSMT  300
RPAVSLSHSD SPQIQLRQGN ETDSCKANTG GQEAIQRHSE AAAAVVASLG PEPCTGGRHY  360
DKPKFENADP SGCRYDSSLG LLTKKFISLI QEAKNGTLDL NKATNVFAVQ KRRIYDITNV  420
LEGIGFIEKT AKSHIRWNKN GGQEDEMAVK QAKELDSRAS SNSQHRVDNT NMSFDHQNSQ  480
QILSDTQNSV GSKASGILKI VPPDFGVDAD YWFQSDHEVS ATDLWGLQHP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-21374441775PROTEIN (TRANSCRIPTION FACTOR E2F-4)
5ccb_B5e-202824620236tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5ccx_B5e-202824620236tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_B5e-202824620236tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_E5e-202824620236tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185194RPFTRRYLRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078477.11e-146tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 isoform X4
TrEMBLA0A2R6RMK81e-169A0A2R6RMK8_ACTCH; tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
STRINGVIT_18s0001g14120.t011e-132(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.12e-29E2F/DP family protein